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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 67 32

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 124 27

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 41 7

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 30 12

  5. presentations presentations Public

    A repository for public presentations

    TeX 5 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 6 6

Repositories

Showing 10 of 99 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 3 0 Updated Jul 16, 2024
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    waldronlab/MicrobiomeBenchmarkDataAnalyses’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 16, 2024
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    JavaScript 6 6 18 0 Updated Jul 15, 2024
  • bugphyzz Public

    Harmonized annotation of microbial physiology

    waldronlab/bugphyzz’s past year of commit activity
    R 4 5 6 0 Updated Jul 15, 2024
  • curatedMetagenomicDataCuration Public

    Sample Metadata Curation for curatedMetagenomicData

    waldronlab/curatedMetagenomicDataCuration’s past year of commit activity
    R 28 23 16 (1 issue needs help) 0 Updated Jul 12, 2024
  • MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    waldronlab/MultiAssayExperiment’s past year of commit activity
    R 67 32 2 0 Updated Jul 8, 2024
  • taxPProValidation Public

    Code for validation analyses for prediction of annotations in bugphyzz

    waldronlab/taxPProValidation’s past year of commit activity
    R 0 0 0 0 Updated Jul 5, 2024
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 40 6 6 2 Updated Jul 2, 2024
  • bugphyzzAnalyses Public

    Analyses with data and signatures imported from the bugphyzz package.

    waldronlab/bugphyzzAnalyses’s past year of commit activity
    R 1 1 0 0 Updated Jun 28, 2024
  • bugphyzzExports Public
    waldronlab/bugphyzzExports’s past year of commit activity
    R 1 1 1 0 Updated Jun 27, 2024
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