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[Bugfix][Metrics] Restart the logging interval clock on empty intervals - #55474

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@WatchTree-19 WatchTree-19 commented Sep 5, 2026 •

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SpecDecodingLogging.log() and PerfMetricsLogging.log() return early when nothing was observed during the interval, without advancing last_log_time. The clock is only moved by reset(), at the end of the non-empty path. LoggingStatLogger.log() calls both unconditionally on a fixed VLLM_LOG_STATS_INTERVAL timer, so the first busy interval after any quiet stretch divides its counters by the whole idle gap.

The under-report factor is 1 + idle_intervals. After 100s idle at a 10s cadence, 300 accepted tokens in a 1s busy interval report 2.970 tok/s instead of 300.0, and MFU reports 0.0198 TF/s/GPU instead of 2.0. Not a crash and not a NaN, just a wrong throughput printed next to correct totals.

The fix calls reset() on the empty branch in both. reset() rather than assigning last_log_time, because PerfMetricsDebugLogging divides total_calc_duration by the same delta_time, so its accumulators have to restart with the clock or mfu_calc_overhead goes above 100%.

Two tests in tests/v1/metrics/test_perf_metrics.py, both failing on main.

I do not have a GPU. The tests were run against the genuine upstream modules with only their heavy transitive imports stubbed; the classes under test are pure Python and touch none of the stubs on the exercised paths. Worth someone running them in a real environment.

Developed with AI assistance per the policy in docs/contributing/README.md; the commit carries a Co-authored-by trailer.

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@mergify mergify Bot added speculative-decoding bug Something isn't working labels Sep 5, 2026
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📒 Files selected for processing (3)
  • tests/v1/metrics/test_logging_intervals.py
  • vllm/v1/metrics/perf.py
  • vllm/v1/spec_decode/metrics.py
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Walkthrough

Metric loggers now reset interval state after empty intervals. Deterministic tests verify that idle time does not skew later throughput, rate, duration, or debug-overhead calculations.

Changes

Idle interval accounting

Layer / File(s) Summary
Logger interval reset
vllm/v1/metrics/perf.py, vllm/v1/spec_decode/metrics.py
Empty intervals now call reset() to restart timing and clear accumulated interval state.
Interval regression tests
tests/v1/metrics/test_logging_intervals.py
Tests use a deterministic clock to verify throughput, rates, debug accumulator resets, duration, and MFU overhead after idle intervals.

Estimated code review effort: 2 (Simple) | ~15 minutes

Merge Risk: 🟡 Moderate · up to 0eeba

Idle performance-metric intervals now clear debug observations along with resetting timing. This can omit prior debug-window data and alter MFU-overhead reporting, so the intended debug accumulation behavior should be reconciled before merge.

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 warning)

Check name Status Explanation Resolution
Docstring Coverage ⚠️ Warning Docstring coverage is 18.75% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 16 functions across 3 files. Write docstrings for the functions missing them to satisfy the coverage threshold.
✅ Passed checks (4 passed)
Check name Status Explanation
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.
Title check ✅ Passed The title clearly identifies the metrics bugfix and the empty-interval logging-clock change. It is concise and directly related to the main changes.
Description check ✅ Passed The description explains the idle-interval throughput bug, the affected logging classes, the fix, and the test coverage. It is directly related to the changeset.
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Actionable comments posted: 1

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Inline comments:
In `@vllm/v1/metrics/perf.py`:
- Line 1522: Align the debug accumulation window with the retained
DebugPerfStats when a zero-FLOP batch is preserved: update the logic around
self.last_log_time and PerfMetricsDebugLogging.log() to track a separate debug
start time or reset the retained debug data at that boundary. Ensure a
subsequent non-empty sample calculates duration and mfu_calc_overhead across the
full retained window, and add a regression test covering a non-empty sample
after the preserved debug-only interval.

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Comment thread vllm/v1/metrics/perf.py Resolved

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Verified locally (head 1d59a4ca vs base bc96d76) — the bug is real and the fix is correct.

Bug confirmed by code reading: SpecDecodingLogging.log() and PerfMetricsLogging.log() both return early on empty intervals WITHOUT advancing last_log_time; the clock is only refreshed by reset() at the end of the non-empty path. The outer LoggingStatLogger.log() (loggers.py:315/:320) calls them unconditionally on a fixed VLLM_LOG_STATS_INTERVAL timer, so the first busy interval after any idle stretch divides its counters by idle + active time — throughput under-reported by 1 + idle_intervals (exactly the 3.33 vs 20.0 tok/s and MFU 6.5 vs 200 TF/s examples in the PR body).

Fix semantics verified correct:

  • Empty branch now restarts only the clock (self.last_log_time = time.monotonic()), NOT reset(). That distinction matters for PerfMetricsLogging: reset() also zeroes debug_logging, whose observe() counts batches that produce no flops/bytes (debug stats are gated on VLLM_DEBUG_MFU_METRICS, independent of the flop/byte totals that gate the early return). Calling reset() there would silently discard debug observations from the still-accumulating window — the chosen approach is the right one. (For SpecDecodingLogging the two are equivalent since observe() appends all four lists together, and the code documents this.)
  • Normal path unchanged: computes delta_time from the restarted clock then reset()s — no double-counting, no clock rollback. last_log_time has no other consumers (only the two log paths + reset, confirmed by grep).

Regression-proven (head test file transplanted onto base code): 3/4 tests FAIL on base / PASS at head:

  • test_spec_decoding_empty_interval_does_not_skew_next_throughput (300 accepted/400 drafted over ACTIVE_SECONDS, not IDLE+ACTIVE)
  • test_perf_metrics_empty_interval_does_not_skew_next_rates (2.0 TF/s/GPU, 3.0 GB/s/GPU over active time only)
  • test_perf_metrics_empty_interval_keeps_debug_accumulators (clock restarted to IDLE_SECONDS while total_num_batches/prefill/decode/calc_duration survive — locks the no-reset() design)
  • Positive control test_spec_decoding_busy_interval_unaffected passes on BOTH (no behavior change to back-to-back intervals).

Test mechanics: FakeClock monkeypatched over the module time (deterministic, no sleeps), _fail_if_called guards the no-log contract, exact pytest.approx throughput assertions. Full file 4/4 pass at head (teardown errors are the standard CPU-host cleanup_dist_env_and_memory fixture noise — torch.accelerator.empty_cache() needs an accelerator; identical on base, not PR-caused).

Only bot reviews (claude/coderabbit) existed; no human verification, no competing PR. This is the missing piece — happy to re-check if the maintainer wants the debug-logging path exercised under real VLLM_DEBUG_MFU_METRICS traffic.

@WatchTree-19
WatchTree-19 force-pushed the fix-idle-logging-interval-clock branch from 1d59a4c to 0eebaed Compare September 6, 2026 13:05
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Good catch, this was right and worse than the flag suggested.

I had restarted last_log_time on the empty branch but deliberately kept the debug accumulators, reasoning that discarding zero-FLOP debug batches loses data. That was backwards: keeping them puts them in a window they did not occur in, which is the same failure this PR exists to fix.

Reproduced against the version that was on the branch — 9.0s of calc accumulated during an idle interval, then a 1.0s busy interval:

"duration": "1.0s", "mfu_calc_overhead": "910.0%"

Correct answer is 10.0%. An overhead fraction above 100%.

PerfMetricsLogging.reset() already clears last_log_time and the debug accumulators together, which is exactly the coupling that has to hold, so I have gone back to calling it. SpecDecodingLogging now uses reset() as well for symmetry — equivalent there, since observe() appends to all four lists together so an empty num_drafts implies the rest are empty.

Test suite is now five tests: both loggers on an idle-then-busy sequence, the busy-to-busy control, the debug window resetting with the clock, and mfu_calc_overhead after an idle stretch. The last two fail against what was previously on this branch.

real interval.

These tests drive both loggers with a deterministic fake clock and assert that an
idle interval does not contaminate the interval that follows it.

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IMO, this is going overboard with testing something so non-critical - at most I'd expect to see a small test added alongside other existing tests

Comment thread vllm/v1/metrics/perf.py Outdated
# to stay together: PerfMetricsDebugLogging.log() is handed
# delta_time and reports total_calc_duration / delta_time, so debug
# totals carried across a restarted clock would be divided by a
# window they did not occur in.

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I don't think these large comments have enough value to warrant this amount of space - this line of code is pretty straightforward, and I think is understandable and intuitive enough without any comment

(Yes, it wasn't so obvious that it was missing ... but with the line of code now there, I'm not sure any reader would spend more than a few seconds confirming its correctness)

@markmc

markmc commented Sep 14, 2026

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Thank you for your contribution

While Claude may be helpful resolving bugs like this, I think you should try to take control of its verbosity, if only for the sake of us reviewers! If you made this contribution without the help of an AI assistant, the PR description, commit message, and code itself would be a tiny fraction of the size. Hope that make sense 👍

@WatchTree-19
WatchTree-19 force-pushed the fix-idle-logging-interval-clock branch from 0eebaed to f6f3ba0 Compare September 14, 2026 17:02
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Fair, and useful to hear it said rather than left in the diff.

Trimmed and force-pushed:

  • The standalone test file is gone. Two tests now, appended to tests/v1/metrics/test_perf_metrics.py, 100 lines including imports rather than 264 in a file of their own.
  • The comments in perf.py and spec_decode/metrics.py are down to three lines and two, from twelve and ten.
  • Commit message and PR description cut to match.

On what went: the busy-to-busy control passed on base and at head, so it was not discriminating anything and it had no business being there. The mfu_calc_overhead end-to-end test went too, since the retained perf test already asserts the debug accumulators are cleared on the empty branch, and that clearing is the whole reason the overhead figure was wrong.

The two that are left are the two that fail on main. For a 100s idle stretch before a 1s busy one, spec-decode reports 2.970 tok/s where 300.0 is correct, and perf reports 0.0198 TF/s/GPU where 2.0 is correct.

One thing I would rather you decided than me: the SpecDecodingLogging test sits in the metrics file rather than under tests/v1/spec_decode/, because everything there wants a GPU and this is pure Python with a fake clock. Say the word and I will move it.

@markmc

markmc commented Sep 15, 2026

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Honestly, I'd prefer to feel like I'm working with a human here. I'd merge the PR if it simply added the two reset lines without comments or tests

@WatchTree-19
WatchTree-19 force-pushed the fix-idle-logging-interval-clock branch from f6f3ba0 to f59737f Compare September 15, 2026 22:55
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Trimmed to the two reset lines. The tests and the comments are gone and it is a single commit now.

@markmc markmc added the ready ONLY add when PR is ready to merge/full CI is needed label Sep 16, 2026
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✅ @WatchTree-19, CI is now available for this PR.

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@markmc
markmc force-pushed the fix-idle-logging-interval-clock branch from f59737f to 0e1cb18 Compare September 16, 2026 10:20
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markmc enabled auto-merge (squash) September 16, 2026 10:20
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markmc commented Sep 16, 2026

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/ci run

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✅ Triggered Buildkite CI #89326 for commit 0e1cb1820f1c.

SpecDecodingLogging.log() and PerfMetricsLogging.log() return early when
nothing was observed during the interval, without advancing last_log_time.
The clock is only moved by reset(), at the end of the non-empty path.
LoggingStatLogger.log() calls both unconditionally on a fixed
VLLM_LOG_STATS_INTERVAL timer, so the first busy interval after any quiet
stretch divides its counters by the whole idle gap and under-reports
throughput by a factor of 1 + idle_intervals.

Call reset() on the empty branch in both.

Signed-off-by: WatchTree-19 <119982314+WatchTree-19@users.noreply.github.com>
auto-merge was automatically disabled September 20, 2026 23:01

Head branch was pushed to by a user without write access

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WatchTree-19 force-pushed the fix-idle-logging-interval-clock branch from 0e1cb18 to d14eca2 Compare September 20, 2026 23:01
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/ci run

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✅ Triggered Buildkite CI #90101 for commit d14eca23c667.

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Rebased onto current main, same two lines. The earlier build failed on the h200 spec-decode-draft-model job with exit status -1 and the branch was behind, so it should get a clean run now.

Whenever you have a minute, the changes-requested from the 14th is still sitting on it.

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