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[Bugfix] Honor safetensors index tensor assignments - #54230

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Leonccaa:fix/safetensors-index-tensor-filter
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Leonccaa wants to merge 3 commits into
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Leonccaa:fix/safetensors-index-tensor-filter

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@Leonccaa Leonccaa commented Aug 28, 2026

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Purpose

Symptom: loading a TP4 Qwen3.8 Flash Next AWQ checkpoint (222,747 tensors) produced wrong weights. The checkpoint reuses 33 official PLE shards, from which its index selects only 129 tensors — but those files also store 1,024 unindexed FP8 expert tensors, some carrying names the index assigns to different AWQ shards. Those stale tensors were loaded and silently overwrote the correct ones.

Root cause: a safetensors index assigns each tensor name to exactly one shard. DefaultModelLoader uses weight_map only to filter the shard file list, then hands those files to the standard safetensors iterator, which yields every tensor stored in each file. The per-file assignment is never enforced, so any checkpoint that intentionally reuses a shard containing extra tensors loads them.

Fix: treat weight_map as a per-file tensor allowlist. _prepare_weights now also returns the index's per-shard tensor sets, and the iterators drop tensors the index did not assign to that shard.

The allowlist is only built when it is actually needed: get_safetensors_index_weights_by_file compares each selected shard's stored tensor names against its index assignment and returns None unless some shard really does store unindexed tensors. Detection reads safetensors headers via safe_open(...).keys(), never tensor data, and returns as soon as the first mismatching shard is found. So ordinary sharded checkpoints — and checkpoints with no index at all — keep every existing loader path unchanged, including the accelerated backends.

Coverage per path:

  • default/lazy and torchao: filtered inside safe_open before get_tensor, so unindexed tensors are never materialized.
  • eager and multithreaded: the shard is decoded as a unit, so unindexed tensors are dropped immediately after decode and never reach weight loading. Correct, but without the memory saving of the lazy paths.
  • A shard absent from the index raises rather than loading unfiltered.

fastsafetensors and instanttensor cannot filter within a shard at all. Rather than let them silently bypass the index, reused-shard checkpoints fall back to the filtered standard iterator with a warning. Ordinary indexed checkpoints are unaffected and keep using these backends.

Duplicate-work check: no open vLLM PR implements per-file index tensor filtering. Searched safetensors index and model loader tensor filter; nearby loader PRs address EP filtering or other formats, not this index contract.

AI assistance: OpenAI Codex assisted with implementation, tests, and PR preparation. I supplied the production reproducer, reviewed every changed line, and ran the tests below.

Test Plan

.venv/bin/python -m pytest \
  tests/model_executor/model_loader/test_filter_duplicate_safetensors.py \
  tests/model_executor/model_loader/test_registry.py -vv

.venv/bin/python -m pytest \
  tests/model_executor/model_loader/test_ep_weight_filter.py \
  -k EpFilterOnSyntheticMoeWeights -vv

.venv/bin/pre-commit run --files \
  vllm/model_executor/model_loader/default_loader.py \
  vllm/model_executor/model_loader/weight_utils.py \
  tests/model_executor/model_loader/test_filter_duplicate_safetensors.py \
  tests/model_executor/model_loader/test_registry.py

The regression builds two shards sharing a main.weight: the indexed shard holds 1.0, the reused shard holds stale 99.0 plus an unindexed tensor. It asserts only main.weight=1.0 and ple.weight=2.0 are yielded, across auto and explicit safetensors load formats and default/lazy/eager strategies, plus a separate case for enable_multithread_load (sorted before asserting, since as_completed does not preserve file order).

Three further tests pin when filtering engages at all: an ordinary sharded checkpoint and a checkpoint with no index must both produce no allowlist, while the reused-shard checkpoint must produce the expected per-shard sets.

Test Result

  • test_filter_duplicate_safetensors.py: 12 passed.
  • test_registry.py: 6 passed.
  • Existing synthetic EP iterator regression: 5 passed.
  • Pre-commit on all changed files: passed (ruff, ruff format, mypy, SPDX).
  • Negative control: with the allowlist built unconditionally, test_prepare_weights_skips_filtering_for_ordinary_checkpoint fails with assert {...: {'main.weight'}, ...: {'ple.weight'}} is None, confirming the test pins the accelerated-backend regression rather than passing vacuously.
  • Real checkpoint: the equivalent change completed TP4 loading of the 222,747-tensor Qwen3.8 Flash Next AWQ model and kept all 1,024 unindexed FP8 expert tensors out of weight loading. That run predates this PR's shard-header detection; the isolated validation above was run on CPU without a GPU.
  • No model compute path changed.

Treat each index weight_map assignment as authoritative within its shard so reused safetensors files cannot inject stale or incompatible tensors.

Assisted-by: OpenAI Codex

Signed-off-by: Leonccaa <166551845+Leonccaa@users.noreply.github.com>
@mergify mergify Bot added the bug Something isn't working label Aug 28, 2026
@Leonccaa
Leonccaa marked this pull request as ready for review August 28, 2026 18:46
@Leonccaa
Leonccaa requested a review from 22quinn as a code owner August 28, 2026 18:46

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Reviewed commit: e8f9a78cfb

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Comment thread vllm/model_executor/model_loader/default_loader.py
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…t paths

Address review: the enable_multithread_load branch bypassed the per-file
index allowlist, so reused shards kept yielding unindexed and duplicate
tensors with nondeterministic overwrite order under as_completed. Pass
indexed_weights_by_file into multi_thread_safetensors_weights_iterator
and filter inside each worker. fastsafetensors/instanttensor iterators
cannot filter within a shard, so indexed-subset checkpoints now fall
back to the filtered standard iterator with a warning.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Signed-off-by: Leonccaa <166551845+Leonccaa@users.noreply.github.com>
Leonccaa added a commit to Leonccaa/1Cat-vLLM that referenced this pull request Aug 28, 2026
…t paths

Mirror of the review fix applied to the upstream submission
(vllm-project/vllm#54230): the enable_multithread_load branch bypassed
the per-file index allowlist, so reused shards kept yielding unindexed
and duplicate tensors with nondeterministic overwrite order under
as_completed. Pass indexed_weights_by_file into
multi_thread_safetensors_weights_iterator and filter inside each worker.
fastsafetensors/instanttensor iterators cannot filter within a shard, so
indexed-subset checkpoints now fall back to the filtered standard
iterator with a warning.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Signed-off-by: Leonccaa <166551845+Leonccaa@users.noreply.github.com>
@Leonccaa

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Review Status Commit Review trigger
📝 Code Review Completed 2026-08-29T22:23:51.176892Z 2711f90 Manual request
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💡 Codex Review

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Reviewed commit: 2db65d04dd

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Comment on lines +290 to +297
if use_special_format and indexed_weights_by_file is not None:
logger.warning(
"Checkpoint index assigns a subset of stored tensors; "
"falling back from %s to the filtered safetensors "
"iterator.",
self.load_config.load_format,
)
use_special_format = False

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P1 Badge Preserve accelerated loaders for ordinary indexed checkpoints

For any model containing model.safetensors.index.json, indexed_weights_by_file is non-None, even when every shard contains exactly the tensors assigned to it. Consequently, selecting --load-format fastsafetensors or instanttensor for a normally sharded model always disables the requested accelerated backend and silently uses the standard CPU iterator; this affects the large indexed checkpoints for which these formats provide the greatest benefit. Detect whether the index is actually a strict subset, or add filtering support to the specialized iterators instead of falling back merely because an index exists.

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Fixed in 2f11ea4 — took the "detect whether the index is actually a strict subset" option. Adding filtering to the specialized iterators would mean changing the fastsafetensors/instanttensor APIs, which is out of scope for this bugfix.

get_safetensors_index_weights_by_file now takes the selected shard list and returns None unless some shard actually stores tensors the index did not assign to it. Detection reads safetensors headers via safe_open(...).keys(), never tensor data, and returns as soon as the first mismatching shard is found.

Consequences:

  • Ordinary sharded checkpoints get None, so fastsafetensors and instanttensor stay in use and every other path is unchanged. The misleading "index assigns a subset" warning no longer fires for them.
  • Only reused-shard checkpoints produce an allowlist, so the fallback warning is now accurate; I reworded it accordingly.

Tests: test_prepare_weights_skips_filtering_for_ordinary_checkpoint pins this exact regression — on the previous commit it fails with assert {...: {'main.weight'}, ...: {'ple.weight'}} is None, and it passes now. Added two more for the reused-shard and no-index cases, and pulled the shared fixture out of the existing tests. Loader file 12 passed, registry 6 passed, EP iterator regression 5 passed, pre-commit clean.

Building the per-file allowlist for every indexed checkpoint disabled the
fastsafetensors and instanttensor backends on all normally sharded models.
Detect whether any selected shard actually stores tensors the index did not
assign to it, by reading safetensors headers, and return no allowlist
otherwise so those paths are untouched.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Signed-off-by: Leonccaa <166551845+Leonccaa@users.noreply.github.com>
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Codex Review: Didn't find any major issues. Swish!

Reviewed commit: 2711f90a11

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@liulanze liulanze left a comment

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I reviewed loader paths and regression tests. The fix looks correct to me.

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