Use scratch

vitessce · Nov 3, 2023 · 6430d5e · 6430d5e
1 parent cb66693
commit 6430d5e
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/demos/common.smk b/demos/common.smk
@@ -1,8 +1,12 @@
 from pathlib import Path
+import platform
+
+# Check if this is running on O2
+IS_O2 = (platform.system() == "Linux")
 
 # Directory / file constants
-SRC_DIR = Path("src")
-DATA_DIR = Path("data")
+SRC_DIR = "src"
+DATA_DIR = ("data" if not IS_O2 else "/n/data1/hms/dbmi/gehlenborg/lab/cao-2020")
 RAW_DIR = DATA_DIR / "raw"
 PROCESSED_DIR = DATA_DIR / "processed"