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Develop for v0.25.0 #293
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Develop for v0.25.0 #293
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- Options are now 'copy', 'link', 'symlink', etc. and are set in params.utils.publish.mode - Default value is 'link' - Fixes #265
- Avoid duplicating the input file, this is replaced with a hard link - Input/output file collisions are avoided by renaming the input file before creating the link - SC__PUBLISH_PROXY is removed from the workflow. The PUBLISH workflow now only needs a single process (instead of two) to publish a file
- Uses single_sample + two clustering parameters
- Moved two-pass writeup to features file - Split input formats to a separate file - Cleanup/streamline getting-started
- Structure index with additonal toc entries - Rename headers in some files - Other cleanup
Documentation updates
- Resolves #253
…xtflow Feature/253 Upgrade for compatibility with Nextflow 20.10.0
…ates Feature/publishing updates
Add new remove10xGEMWell to be backward compatible
…mple-suffix Fix/288 cellbarcode sample suffix
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Major updates:
-1suffixes are no longer removed by default ([SUGGESTION] Avoid correction of barcode names #288)Publishing system updates:
params.publish.modeis 'copy' ([BUG] Failed to publish file across filesystems #265)Other:
develop