Extracting specific path IDs for making subset gfa file

[OZTaekOppa]

I’m wondering if there’s a way to extract only specific assemblies from the PGGB-generated GFA file. For example, is it possible to extract just the paths covered by ^HH* and ^NA* to make a subset of a GFA file? Or, do you know any alternative programs (e.g. odgi or gfatools) for this task?

Kind regards,

Taek

[glennhickey]

remove all the but your selected paths with vg paths -r -p <path list file>. Then remove nodes and edges not in paths with vg mod -N.