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  1. vg vg Public

    tools for working with genome variation graphs

    C++ 1.1k 192

  2. libbdsg libbdsg Public

    Optimized sequence graph implementations for graph genomics

    C++ 30 6

  3. libhandlegraph libhandlegraph Public

    Library for the Handle Graph abstraction

    C++ 20 3

  4. toil-vg toil-vg Public

    Distributed and cloud computing framework for vg

    Python 21 14

Repositories

Showing 10 of 54 repositories
  • vg Public

    tools for working with genome variation graphs

    vgteam/vg’s past year of commit activity
    C++ 1,079 192 798 (9 issues need help) 11 Updated Jul 17, 2024
  • sequenceTubeMap Public

    displays multiple genomic sequences in the form of a tube map

    vgteam/sequenceTubeMap’s past year of commit activity
    JavaScript 177 MIT 24 79 9 Updated Jul 10, 2024
  • libvgio Public

    A dynamic library that provides io for the vg toolkit.

    vgteam/libvgio’s past year of commit activity
    C++ 8 7 6 0 Updated Jul 10, 2024
  • libbdsg Public

    Optimized sequence graph implementations for graph genomics

    vgteam/libbdsg’s past year of commit activity
    C++ 30 MIT 6 23 7 Updated Jul 9, 2024
  • vg_wdl Public

    Workflow Description Language (WDL) scripts for common vg workflows

    vgteam/vg_wdl’s past year of commit activity
    WDL 15 MIT 8 10 1 Updated Jul 8, 2024
  • long-read-giraffe-experiments Public

    Experimental materials for testing the long-read mapping abilities of vg giraffe

    vgteam/long-read-giraffe-experiments’s past year of commit activity
    Python 2 0 25 0 Updated Jul 2, 2024
  • sdsl-lite Public Forked from simongog/sdsl-lite

    Succinct Data Structure Library 2.0

    vgteam/sdsl-lite’s past year of commit activity
    C++ 8 352 0 1 Updated Jun 4, 2024
  • dozeu Public Forked from ocxtal/dozeu

    SIMD-parallel BLAST X-drop DP on sequence graphs

    vgteam/dozeu’s past year of commit activity
    C 0 6 0 0 Updated May 30, 2024
  • vg_snakemake Public

    Snakemake workflow for the vg toolkit.

    vgteam/vg_snakemake’s past year of commit activity
    Python 8 GPL-3.0 4 0 1 Updated May 28, 2024
  • giraffe-sv-paper Public
    vgteam/giraffe-sv-paper’s past year of commit activity
    Shell 39 7 6 0 Updated May 8, 2024
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