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To do this, we need to be able to identify predecessor/successor on the output of locate queries from the GBWT to enforce colinearity constraints on the haplotype sequences through exons. @jltsiren tells me that this is possible with the R-index. However, this will require building the R-index alongside the GBWT in the vg rna pipeline, as well as its implementation in vg autoindex.
The text was updated successfully, but these errors were encountered:
Pertains to #4397.
To do this, we need to be able to identify predecessor/successor on the output of locate queries from the GBWT to enforce colinearity constraints on the haplotype sequences through exons. @jltsiren tells me that this is possible with the R-index. However, this will require building the R-index alongside the GBWT in the
vg rna
pipeline, as well as its implementation invg autoindex
.The text was updated successfully, but these errors were encountered: