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Wrong genome build for IGV visualization of SV #1511

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flokraft85 opened this issue Apr 4, 2024 · 1 comment · Fixed by #1558
Closed

Wrong genome build for IGV visualization of SV #1511

flokraft85 opened this issue Apr 4, 2024 · 1 comment · Fixed by #1558
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@flokraft85
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Describe the bug
The IGV tracks on the variant details page for SV show as source bed files which are GRCh37 and not GRCh38.

To Reproduce
n/a

Expected behavior
As the VarFish instance is cofigured to use GRCh37 and the data uploade to VarFish is GRCh38, GRCh38 data should be used.
For the transcript the GRCh38 data set is used.

Screenshots
grafik

Desktop (please complete the following information):

  • OS: Win10
  • Browser Firefox
  • Version 123.0.1

Smartphone (please complete the following information):
n/a

Additional context
n/a

@flokraft85 flokraft85 added the bug Something isn't working label Apr 4, 2024
@stolpeo stolpeo self-assigned this Apr 12, 2024
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stolpeo commented Apr 19, 2024

I assume that this is a follow-up error because the variant comments are not properly set up for the SVs. I will fix that error first and merge it, we will roll it out on your instance and see whether that helped. If no, I will create a follow-up ticket. @flokraft85

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