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fix: docker-compose.override.yml for cadd-rest-api #73

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merged 1 commit into from
Jun 10, 2024
Merged

fix: docker-compose.override.yml for cadd-rest-api #73

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20 changes: 20 additions & 0 deletions cadd-rest-api.env.tpl
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Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
# Environment for cadd-rest-api related containers.

LC_ALL=en_US.UTF-8

DATABASE_URL=/data/db/cadd_rest_api.db

# We can share one redis instance but not the database with another celery.
CELERY_BROKER_URL=redis://redis:6379/1
# Only one CADD process can be run per CADD container because of using
# Snakemake.
CELERY_WORKERS=1

DJANGO_ALLOWED_HOSTS="*"
DJANGO_SECRET_KEY="kah3geeLeed1Kiej9ohng4aiDo0uho4aiRa1KoojeMaiG3qua3Ahku6voo9eeT2a"
DJANGO_SETTINGS_MODULE="config.settings.production"
DJANGO_SECURE_SSL_REDIRECT=0

CADD_SH=/opt/miniconda3/share/cadd-scripts-1.6.post1-0/CADD.sh
CADD_CONDA=/opt/miniconda3/bin/activate
CADD_TIMEOUT=300
8 changes: 5 additions & 3 deletions docker-compose.override.yml-cadd
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,8 @@ services:

cadd-rest-api-server:
<<: *service_default
image: "${image_cadd_name-varfish-org/cadd-rest-api}:${image_cadd_version-0.3.4-0}"
image: "${image_base-ghcr.io/varfish-org}/\
${image_cadd_name:-cadd-rest-api}:${image_cadd_version:-main}"
env_file: cadd-rest-api.env
command:
- wsgi
Expand All @@ -36,8 +37,9 @@ services:
cadd-rest-api-worker:
<<: *service_default
deploy:
replicas: 5
image: "${image_cadd_name-varfish-org/cadd-rest-api}:${image_cadd_version-0.3.4-0}"
replicas: "${cadd_rest_api_worker_replicas:-5}"
image: "${image_base-ghcr.io/varfish-org}/\
${image_cadd_name:-cadd-rest-api}:${image_cadd_version:-main}"
env_file: cadd-rest-api.env
command:
- celeryd
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