fix: seqdup => segdup

varfish-org · Feb 27, 2024 · 083c66f · 083c66f
1 parent c5c759a
commit 083c66f
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/download-data.sh b/download-data.sh
@@ -479,17 +479,17 @@ ln -sr $(ls $DATA_DIR/download/worker/genes-regions-grch38-*/refseq_genes.bin |
 
 log_info "  - grch3{7,8}/features"
 mkdir -p $DATA_DIR/worker/grch3{7,8}/features
-rm -f $DATA_DIR/worker/grch3?/features/{masked_repeat.bin,masked_seqdup.bin}
+rm -f $DATA_DIR/worker/grch3?/features/{masked_repeat.bin,masked_segdup.bin}
 
 ln -sr $(ls $DATA_DIR/download/worker/masked-repeat-grch37-*/masked-repeat.bin | tr ' ' '\n' | tail -n 1) \
   $DATA_DIR/worker/grch37/features/masked_repeat.bin
 ln -sr $(ls $DATA_DIR/download/worker/masked-segdup-grch37-*/masked-segdup.bin | tr ' ' '\n' | tail -n 1) \
-  $DATA_DIR/worker/grch37/features/masked_seqdup.bin
+  $DATA_DIR/worker/grch37/features/masked_segdup.bin
 
 ln -sr $(ls $DATA_DIR/download/worker/masked-repeat-grch38-*/masked-repeat.bin | tr ' ' '\n' | tail -n 1) \
   $DATA_DIR/worker/grch38/features/masked_repeat.bin
 ln -sr $(ls $DATA_DIR/download/worker/masked-segdup-grch38-*/masked-segdup.bin | tr ' ' '\n' | tail -n 1) \
-  $DATA_DIR/worker/grch38/features/masked_seqdup.bin
+  $DATA_DIR/worker/grch38/features/masked_segdup.bin
 
 log_info "- tracks"