fix: fixing issue with logging

Release-As: 0.5.3
varfish-org · Jul 17, 2023 · ab62f24 · ab62f24
1 parent 49fcc5c
commit ab62f24
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/varfish_cli/case/create_case_import.py b/varfish_cli/case/create_case_import.py
@@ -24,7 +24,6 @@
     CaseImportState,
     CaseVariantType,
     DatabaseInfoFile,
-    EffectsFile,
     GenomeBuild,
     GenotypeFile,
     PedigreeMember,
@@ -476,7 +475,7 @@ def _split_files_by_role(self):  # noqa
         if not self.path_ped:
             issues.append("no PED file given")
         if len(self.paths_effect_sv):
-            logging.info("Will ignore any SV effect files")
+            logger.info("Will ignore any SV effect files")
         if not self.paths_genotype and not self.paths_genotype_sv:
             issues.append("neither small nor SVs given")
         if len(self.paths_genotype) > 1: