Merge pull request #710 from vaccineontology/updating-CVX-code

Updating cvx code
vaccineontology · May 30, 2024 · c3124b3 · c3124b3
2 parents 1513a81 + b7b2186
commit c3124b3
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Showing 15 changed files with 41,579 additions and 26,256 deletions.
diff --git a/CVO/cvo.owl b/CVO/cvo.owl
diff --git a/CVX-VO/cvx-vo.owl b/CVX-VO/cvx-vo.owl
diff --git a/robot_report.tsv b/robot_report.tsv
diff --git a/src/imports/externalByHand.owl b/src/imports/externalByHand.owl
@@ -128,9 +128,18 @@
         <rdfs:label>mesothelioma</rdfs:label>
         <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/mondo.owl"/>
     </owl:Class>
+
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCIT_C85994">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000070"/>
+        <obo:IAO_0000115>A test to determine if a subject has ever had a tuberculosis infection. A small amount of purified tuberculosis protein is placed under the skin of the forearm and a positive skin reaction indicates previous exposure to Mycobacterium tuberculosis.</obo:IAO_0000115>
+        <rdfs:label>Tuberculin Skin Test</rdfs:label>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncit.owl"/>
+    </owl:Class>
 </rdf:RDF>
 
 
 
+
 <!-- Generated by the OWL API (version 3.3.1957) http://owlapi.sourceforge.net -->
 
diff --git a/src/modules/other.owl b/src/modules/other.owl
@@ -59,12 +59,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/VO_0003198 -->
-
-    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/VO_0003198"/>
-
-
-
     <!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
 
     <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
@@ -2739,7 +2733,6 @@ of minimal anatomy terminology and NCBI taxonomy... Eventually, this term chicke
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0004869">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10508"/>
         <obo:IAO_0000119>http://purl.bioontology.org/ontology/RXNORM/1299785</obo:IAO_0000119>
-        <obo:VO_0003198>1299785</obo:VO_0003198>
         <oboInOwl:inSubset>organism</oboInOwl:inSubset>
         <rdfs:comment>CUI: C3159361</rdfs:comment>
         <rdfs:comment>RXAUI: 4624424</rdfs:comment>
@@ -2754,7 +2747,6 @@ of minimal anatomy terminology and NCBI taxonomy... Eventually, this term chicke
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0004871">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10508"/>
         <obo:IAO_0000119>http://purl.bioontology.org/ontology/RXNORM/1802483</obo:IAO_0000119>
-        <obo:VO_0003198>1802483</obo:VO_0003198>
         <oboInOwl:inSubset>organism</oboInOwl:inSubset>
         <rdfs:comment>CUI: C4083103</rdfs:comment>
         <rdfs:comment>RXAUI: 8240118</rdfs:comment>
@@ -3029,6 +3021,7 @@ of minimal anatomy terminology and NCBI taxonomy... Eventually, this term chicke
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
         <obo:IAO_0000115>An information content entity that specify no vaccine adminstered.</obo:IAO_0000115>
         <obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
+        <obo:IAO_0000119>https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx</obo:IAO_0000119>
         <oboInOwl:inSubset>information content entity</oboInOwl:inSubset>
         <rdfs:label>no vaccine administered</rdfs:label>
     </owl:Class>
@@ -3042,12 +3035,27 @@ of minimal anatomy terminology and NCBI taxonomy... Eventually, this term chicke
         <obo:IAO_0000115>A record of missing knowledge indicating that vaccine or immune globulin is unknown.</obo:IAO_0000115>
         <obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
         <obo:IAO_0000118>unknown vaccine or immune globulin</obo:IAO_0000118>
+        <obo:IAO_0000119>https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx</obo:IAO_0000119>
         <oboInOwl:inSubset>information content entity</oboInOwl:inSubset>
         <rdfs:label>record of unknown vaccine or immune globulin</rdfs:label>
     </owl:Class>
 
 
 
+    <!-- http://purl.obolibrary.org/obo/VO_0010229 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0010229">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+        <obo:IAO_0000115>An information content entity that specify the CVX code that will not be used to avoid confusion with code 999.</obo:IAO_0000115>
+        <obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
+        <obo:IAO_0000118>RESERVED - do not use</obo:IAO_0000118>
+        <obo:IAO_0000119>https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx</obo:IAO_0000119>
+        <oboInOwl:inSubset>information content entity</oboInOwl:inSubset>
+        <rdfs:label>reserved cvx code for not using</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/VO_0015061 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0015061">

diff --git a/src/modules/process.owl b/src/modules/process.owl
@@ -237,6 +237,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/NCIT_C85994 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCIT_C85994"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/OBI_0000011 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
@@ -2905,6 +2911,54 @@ http://www.medicines.org.uk/guides/priorix/Vaccinations%20%28all%29/ </rdfs:comm
 
 
 
+    <!-- http://purl.obolibrary.org/obo/VO_0010230 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0010230">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCIT_C85994"/>
+        <obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
+        <obo:IAO_0000118>TST-OT tine test</obo:IAO_0000118>
+        <oboInOwl:inSubset>assay</oboInOwl:inSubset>
+        <rdfs:label>tuberculin skin test; old tuberculin, multipuncture device</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/VO_0010231 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0010231">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCIT_C85994"/>
+        <obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
+        <obo:IAO_0000118>TST-PPD intradermal</obo:IAO_0000118>
+        <oboInOwl:inSubset>assay</oboInOwl:inSubset>
+        <rdfs:label>tuberculin skin test; purified protein derivative solution, intradermal</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/VO_0010232 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0010232">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCIT_C85994"/>
+        <obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
+        <obo:IAO_0000118>TST-PPD tine test</obo:IAO_0000118>
+        <oboInOwl:inSubset>assay</oboInOwl:inSubset>
+        <rdfs:label>tuberculin skin test; purified protein derivative, multipuncture device</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/VO_0010233 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0010233">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCIT_C85994"/>
+        <obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
+        <obo:IAO_0000118>TST, unspecified formulation</obo:IAO_0000118>
+        <oboInOwl:inSubset>assay</oboInOwl:inSubset>
+        <rdfs:label>tuberculin skin test; unspecified formulation</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/VO_0010702 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0010702">