Revert "updated comments and filename"

This reverts commit 0ce81c5.

src/templates/protein.csv

@@ -1,10 +1,10 @@
-ID,LABEL,InSubset,Parent,has part,has role,in taxon,definition,definition source,term editor,alternative label,seeAlso,editor note,comment,comment
+ID,LABEL,InSubset,Parent,has part,has role,in taxon,definition,definition source,term editor,alternative label,seeAlso,editor note,comment,comment
 ID,A rdfs:label,A http://www.geneontology.org/formats/oboInOwl#inSubset,C %,C 'has part' some % SPLIT=|,C 'has role' some % SPLIT=|,C 'in taxon' some % SPLIT=|,A definition,A definition source SPLIT=|,A term editor SPLIT=|,A alternative label SPLIT=|,A rdfs:seeAlso SPLIT=|,A editor note SPLIT=|,A rdfs:comment SPLIT=|,
 VO:0000516,human protein,protein,protein,,,,a protein from human,,YH,,,,,
-VO:0000519,human ACPP,protein,human protein,,protective antigen role,,,,YH,,GenBank: AC020633; Protein RefSeq: NP_001090,,,
+VO:0000519,human ACPP,protein,human protein,,protective antigen role,,,,YH,,GenBank: AC020633; Protein RefSeq: NP_001090 ,,,
 VO:0003028,human serum albumin,protein,human protein,,,,the serum albumin that is part of human,,YL,,UniProtKB:P02768,it is subclass of 'serum albumin (PR:000003918)',,
 VO:0003801,Varicella zoster virus glycoprotein E,protein,Varicella-zoster virus protein,,,,,http://purl.bioontology.org/ontology/RXNORM/1986821,"Kallan Roan, Oliver He",,,,"CUI: C0061673|RXAUI: 9698276|TUI: T116, T129, T121",RxNorm
-VO:0003802,"Varicella zoster virus glycoprotein E, recombinant",protein,Varicella zoster virus glycoprotein E,,,,,http://purl.bioontology.org/ontology/RXNORM/1986820,"Kallan Roan, Oliver He",,,,"CUI: C4530095|RXAUI: 9698275|TUI: T116, T129, T121",RxNorm not in OMOP
+VO:0003802,"Varicella zoster virus glycoprotein E, recombinant",protein,Varicella zoster virus glycoprotein E,,,,,http://purl.bioontology.org/ontology/RXNORM/1986820,"Kallan Roan, Oliver He",,,,"CUI: C4530095|RXAUI: 9698275|TUI: T116, T129, T121",RxNorm
 VO:0003803,"Varicella zoster virus glycoprotein E, recombinant 0.1 MG/ML",protein,"Varicella zoster virus glycoprotein E, recombinant",,,,,http://purl.bioontology.org/ontology/RXNORM/1986822,,,,,CUI: C4530096|RXAUI: 9698277|TUI: T200,RxNorm
 VO:0004906,MERS-CoV protein,protein,virus protein,,,,,,,,,,,
 VO:0004907,MERS-CoV S protein,protein,MERS-CoV protein,,,,,,,,,,,
@@ -725,7 +725,7 @@ VO:0011326,CEL-170/4,protein,Entamoeba histolytica protein,,protective antigen r
 VO:0011327,PLB,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 796; NCBI Protein GI: 74486661; NCBITaxon: 199306,,C57BL/6 mice immunized with rPlb showed a significant reduction of the fungal burden in their lungs at 90 days postchallenge compared to the control mice at 15 days [PubMed: 16369008].,
 VO:0011328,AMN1,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 797; NCBI Protein GI: 76786276; NCBITaxon: 199306,,C57BL/6 mice immunized with rAMN1 showed a significant reduction of the fungal burden in their lungs at 90 days postchallenge compared to the control mice at 15 days [PubMed: 16369008].,
 VO:0011329,ELI-Ag1,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 798; NCBI Protein GI: 37779128; NCBITaxon: 5501,,ELI-Antigen 1 (ELI-Ag1) was tested for its protective capacity in BALB/c mice against intraperitoneal challenge with 2500 arthroconidia of this dimorphic fungus and was found to be highly protective [PubMed: 14505918].,
-VO:0011330,GEL1.00,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 799; NCBI Protein GI: 14582416; NCBITaxon: 199306,,"The GEL1 mRNA of C. posadasii was detected at the highest level during the endosporulation stage of the parasitic cycle, and the mature protein was immunolocalized to the surface of endospores. BALB/c or C57BL/6 mice were immunized subcutaneously with the bacterium-expressed recombinant protein (rGel1p) to evaluate its protective efficacy against a lethal challenge of C. posadasii by either the intraperitoneal or intranasal route. In both cases, rGel1p-immune mice infected with the pathogen showed a significant reduction in fungal burden and increased survival compared to nonimmune mice [PubMed: 12761077].",
+VO:0011330,GEL1,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 799; NCBI Protein GI: 14582416; NCBITaxon: 199306,,"The GEL1 mRNA of C. posadasii was detected at the highest level during the endosporulation stage of the parasitic cycle, and the mature protein was immunolocalized to the surface of endospores. BALB/c or C57BL/6 mice were immunized subcutaneously with the bacterium-expressed recombinant protein (rGel1p) to evaluate its protective efficacy against a lethal challenge of C. posadasii by either the intraperitoneal or intranasal route. In both cases, rGel1p-immune mice infected with the pathogen showed a significant reduction in fungal burden and increased survival compared to nonimmune mice [PubMed: 12761077].",
 VO:0011331,URE,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 800; NCBI Protein GI: 73808050; NCBITaxon: 5501,,Recombinant urease (rURE) of C. immitis was expressed in Escherichia coli and tested asa vaccine candidate in BALB/c mice. BALB/c mice immunized subcutaneously with rURE and subsequently challenged by the intraperitoneal (i.p.) route with a lethal inoculum of C. immitis arthroconidia demonstrated a significant reduction in the level of C. immitis infection compared to control animals [PubMed: 11292702].,
 VO:0011332,Pmp1,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 801; NCBI Protein GI: 78364922; NCBITaxon: 199306,,"Recombinant Pmp1 was reactive with serum from individuals with both acute and protracted disease, and evoked protection in two murine models of infection with C. posadasii [PubMed: 16495561].",
 VO:0011333,Pra,protein,Coccidioides spp. protein,,protective antigen role,,,,"YH, ZX",,Protegen ID: 802; NCBI Protein GI: 42742528; NCBITaxon: 5501,,"C57BL6 mice were immunized with syngeneic, bone marrow-derived DCs (JAWS II cells) transfected with a cDNA encoding the protective Coccidioides-Ag2/proline-rich Ag (pra). The immunized mice were lethally challenged with C. posadasii through either an i.p. or intranasal route. Upon necropsy after 10 days of infection, fungal burden in lung and spleen of immunized mice was significantly reduced as compared with the control animals. The lung tissue homogenates of immunized animals showed higher levels of IFN-gamma. Histologically, lung tissues of immunized mice were in better condition than the control mice [PubMed: 16148136].",