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fix known issues of process related terms, issue: #786
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@zhengj2007
zhengj2007 committed Dec 29, 2024
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14 changes: 8 additions & 6 deletions src/modules/process.owl
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Expand Up @@ -1338,7 +1338,7 @@
<!-- http://purl.obolibrary.org/obo/VO_0000494 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0000494">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VO_0000491"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VO_0000490"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0000496">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>disorder prevention is a processual entity that prevents a disorder that is the physical basis of a disease.</obo:IAO_0000115>
<obo:IAO_0000115>Process that prevents a disorder that is the physical basis of a disease.</obo:IAO_0000115>
<obo:IAO_0000117>Allen Xiang</obo:IAO_0000117>
<obo:IAO_0000117>Oliver He</obo:IAO_0000117>
<oboInOwl:inSubset>process</oboInOwl:inSubset>
Expand All @@ -1411,7 +1411,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0000497">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>disorder treatment is a processual entity that leads to treat a disorder that is the physical basis of a disease.</obo:IAO_0000115>
<obo:IAO_0000115>Process that leads to treat a disorder that is the physical basis of a disease.</obo:IAO_0000115>
<obo:IAO_0000117>Allen Xiang</obo:IAO_0000117>
<obo:IAO_0000117>Oliver He</obo:IAO_0000117>
<oboInOwl:inSubset>process</oboInOwl:inSubset>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0001103">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>inactivation is a processual entity that produces inactive material.</obo:IAO_0000115>
<obo:IAO_0000115>Inactivation is a processual entity that produces inactive material.</obo:IAO_0000115>
<obo:IAO_0000117>Allen Xiang</obo:IAO_0000117>
<obo:IAO_0000117>Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117>Oliver He</obo:IAO_0000117>
Expand All @@ -2067,7 +2067,7 @@ The best way to determine if a vaccine is effective is to test it in a randomize

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0001116">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>survival of live vaccine inside host is a processual entity that represents the survival of a live vaccine inside its host. The time of the survival is often important for the success of the live vaccine.</obo:IAO_0000115>
<obo:IAO_0000115>Survival of live vaccine inside host is a process that represents the survival of a live vaccine inside its host. The time of the survival is often important for the success of the live vaccine.</obo:IAO_0000115>
<obo:IAO_0000117>Oliver He</obo:IAO_0000117>
<oboInOwl:inSubset>process</oboInOwl:inSubset>
<rdfs:label>survival of live vaccine inside host</rdfs:label>
Expand All @@ -2079,7 +2079,7 @@ The best way to determine if a vaccine is effective is to test it in a randomize

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0001117">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>persistence of vaccine induced immune response is a processual entity that indicates the persistence of an immune reponse induced by a vaccine in a vaccinated host.</obo:IAO_0000115>
<obo:IAO_0000115>Persistence of vaccine induced immune response is a processual entity that indicates the persistence of an immune reponse induced by a vaccine in a vaccinated host.</obo:IAO_0000115>
<obo:IAO_0000117>Oliver He</obo:IAO_0000117>
<oboInOwl:inSubset>process</oboInOwl:inSubset>
<rdfs:label>persistence of vaccine induced immune response</rdfs:label>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0005308">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000144"/>
<obo:IAO_0000115>Process profile that reflects a pattern of a specific immune response.</obo:IAO_0000115>
<obo:IAO_0000117>Oliver He</obo:IAO_0000117>
<oboInOwl:inSubset>process profile</oboInOwl:inSubset>
<rdfs:label>immune response profile</rdfs:label>
</owl:Class>
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14 changes: 7 additions & 7 deletions src/templates/process.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ VO:0010230,"tuberculin skin test; old tuberculin, multipuncture device",assay,NC
VO:0010231,"tuberculin skin test; purified protein derivative solution, intradermal",assay,NCIT:C85994,Tuberculin Skin Test,,,,,,,,,,,,,,,Jie Zheng,,TST-PPD intradermal,,,,,
VO:0010232,"tuberculin skin test; purified protein derivative, multipuncture device",assay,NCIT:C85994,Tuberculin Skin Test,,,,,,,,,,,,,,,Jie Zheng,,TST-PPD tine test,,,,,
VO:0010233,tuberculin skin test; unspecified formulation,assay,NCIT:C85994,Tuberculin Skin Test,,,,,,,,,,,,,,,Jie Zheng,,"TST, unspecified formulation",,,,,
VO:0000494,vaccine immunization,process,active immunization,,,immunization objective,,,vaccine,,,,,,('vaccine recipient role' and ('characteristic of' some organism)),,An immunization that is induced by a vaccine via vaccination process.,WEB: http://en.wikipedia.org/wiki/Immunization,Oliver He|Allen Xiang|Barry Smith|Jie Zheng|Anna Maria Masci,,artificial active immunization,,,,,
VO:0000494,vaccine immunization,process,VO:0000490,immunization,,immunization objective,,,vaccine,,,,,,('vaccine recipient role' and ('characteristic of' some organism)),,An immunization that is induced by a vaccine via vaccination process.,WEB: http://en.wikipedia.org/wiki/Immunization,Oliver He|Allen Xiang|Barry Smith|Jie Zheng|Anna Maria Masci,,artificial active immunization,,,,,
VO:0000495,induction of adaptive immune response to antigen,process,active immunization,,,,,,,,,,,,,,"induction of adaptive immune response to antigen is an active immunization process that results in induction of adaptive immune response to some antigens, for example, in a vaccine.",,Oliver He|Allen Xiang,,,,,,,
VO:0000498,modification of adaptive immune response to antigen,process,active immunization,,,,,,,,,,,,,,"modification of adaptive immune response to antigen is an active immunization process that results in modification of an adaptive immune response to some antigens, for example, in a therapeutic vaccine.",,Oliver He|Allen Xiang,,,,,,,
VO:0000493,natural active immunization,process,active immunization,,,,,,,,,,,,,,natural active immunization is an active immunization that occur naturally when a person or animal comes in contact with antigens includeing microbes.,WEB: http://en.wikipedia.org/wiki/Immunization,Oliver He|Allen Xiang,,,,,,,
Expand All @@ -44,14 +44,14 @@ VO:0002707,TK from Equid herpesvirus,process,planned process,,,,,,,,,,,,,,"A thy
VO:0000683,vaccine regulation,process,planned process,,,,,,,,,,,,,,"Process that regulates vaccine-related processes, such as vaccine trial, vaccine license application.",,Oliver He,,,,,,,
VO:0000684,vaccine transportation,process,planned process,,,,,,,,,,,,,,Process of transporting vaccine from one place to another place.,,Oliver He,,,,,,,
VO:0000288,vaccine-induced response,process,process,,,,,organism|vaccine,,,,,,,,,Process that specifies the organism's response to an administered vaccine.,,Oliver He|Jie Zheng|Asiyah Yu Lin,,vaccine-induced host response,,,,https://github.com/vaccineontology/VO/issues/781,
VO:0000496,disorder prevention,process,process,,,,,,,,,,,,,,disorder prevention is a processual entity that prevents a disorder that is the physical basis of a disease.,,Oliver He|Allen Xiang,,,,,,,
VO:0000497,disorder treatment,process,process,,,,,,,,,,,,,,disorder treatment is a processual entity that leads to treat a disorder that is the physical basis of a disease.,,Oliver He|Allen Xiang,,,,,,,
VO:0000496,disorder prevention,process,process,,,,,,,,,,,,,,Process that prevents a disorder that is the physical basis of a disease.,,Oliver He|Allen Xiang,,,,,,,
VO:0000497,disorder treatment,process,process,,,,,,,,,,,,,,Process that leads to treat a disorder that is the physical basis of a disease.,,Oliver He|Allen Xiang,,,,,,,
VO:0000290,host response to vaccine component,process,process,,,,,,,,,,,,,,Process that specifies host response to a vaccine component.,,Oliver He,,,,,,,
VO:0000490,immunization,process,process,,,,,,,,,,,,,,Process that results in an adaptive immune response to one or more antigens.,WEB: http://en.wikipedia.org/wiki/Immunization,Oliver He|Allen Xiang|Bjoern Peters|Barry Smith|Jie Zheng|Anna Maria Masci,,,,,,,
VO:0001103,inactivation,process,process,,,,,,,,,,,,,,inactivation is a processual entity that produces inactive material.,,Oliver He|Melanie Courtot|Allen Xiang,,,,,,,
VO:0001117,persistence of vaccine induced immune response,process,process,,,,,,,,,,,,,,persistence of vaccine induced immune response is a processual entity that indicates the persistence of an immune reponse induced by a vaccine in a vaccinated host.,,Oliver He,,,,,,,
VO:0001116,survival of live vaccine inside host,process,process,,,,,,,,,,,,,,survival of live vaccine inside host is a processual entity that represents the survival of a live vaccine inside its host. The time of the survival is often important for the success of the live vaccine.,,Oliver He,,,,,,,
VO:0005308,immune response profile,process profile,BFO:0000144,process profile,,,,,,,,,,,,,,,,,,,,,,
VO:0001103,inactivation,process,process,,,,,,,,,,,,,,Inactivation is a processual entity that produces inactive material.,,Oliver He|Melanie Courtot|Allen Xiang,,,,,,,
VO:0001117,persistence of vaccine induced immune response,process,process,,,,,,,,,,,,,,Persistence of vaccine induced immune response is a processual entity that indicates the persistence of an immune reponse induced by a vaccine in a vaccinated host.,,Oliver He,,,,,,,
VO:0001116,survival of live vaccine inside host,process,process,,,,,,,,,,,,,,Survival of live vaccine inside host is a process that represents the survival of a live vaccine inside its host. The time of the survival is often important for the success of the live vaccine.,,Oliver He,,,,,,,
VO:0005308,immune response profile,process profile,BFO:0000144,process profile,,,,,,,,,,,,,Process profile that reflects a pattern of a specific immune response.,,Oliver He,,,,,,,
VO:0005309,Th1-biased immune profile,process profile,immune response profile,,,,,,,,,,,,,,"A biased immune profile that is characterized by the presense of T help cells Type 1 T helper (Th1) cells that produce interferon-gamma, interleukin (IL)-2, and tumour necrosis factor (TNF)-beta, which activate macrophages and are responsible for cell-mediated immunity and phagocyte-dependent protective responses.",https://en.wikipedia.org/wiki/T_helper_cell|https://pubmed.ncbi.nlm.nih.gov/10579123/,Oliver He|Amogh Madireddi,,,,,,,
VO:0005314,Th1/Th17 mixed immune profile,process profile,immune response profile,,,,,,,,,,,,,,An immune profile that is characterized by the presense of both Type 1 and Type 17 T helper (Th1 and Th17) cells.,https://en.wikipedia.org/wiki/T_helper_cell,Oliver He|Amogh Madireddi,,,,,,,
VO:0005311,Th1/Th2 mixed immune profile,process profile,immune response profile,,,,,,,,,,,,,,An immune profile that is characterized by the presense of both Type 1 and Type 2 T helper (Th1 and Th2) cells.,https://en.wikipedia.org/wiki/T_helper_cell|https://pubmed.ncbi.nlm.nih.gov/10579123/,Oliver He|Amogh Madireddi,,,,,,,
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