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Merge pull request #734 from vaccineontology/release-candidate-20240808
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Release candidate 20240808
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@zhengj2007
zhengj2007 authored Aug 11, 2024
2 parents 8defefd + 432992b commit 020508b
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Showing 25 changed files with 108,164 additions and 6,550 deletions.
1,465 changes: 1,180 additions & 285 deletions CVO/cvo.owl
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3,857 changes: 3,549 additions & 308 deletions CVX-VO/cvx-vo.owl
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34 changes: 32 additions & 2 deletions robot_report.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -844,6 +844,13 @@ WARN annotation_whitespace VO:0011373 IAO:0000117 Oliver He
WARN annotation_whitespace VO:0011507 IAO:0000117 Oliver He
WARN annotation_whitespace VO:0011510 IAO:0000117 Oliver He
WARN annotation_whitespace VO:0021164 IAO:0000115 A varicella-zoster virus live vaccine designed to prevent shingles (herpes zoster).
WARN duplicate_exact_synonym VO:0010365 IAO:0000118
WARN duplicate_exact_synonym VO:0010366 IAO:0000118
WARN duplicate_exact_synonym VO:0010363 IAO:0000118
WARN duplicate_exact_synonym VO:0010364 IAO:0000118
WARN duplicate_exact_synonym VO:0010334 IAO:0000118
WARN duplicate_exact_synonym VO:0010335 IAO:0000118
WARN duplicate_exact_synonym VO:0010352 IAO:0000118
WARN duplicate_exact_synonym VO:0000436 IAO:0000118
WARN duplicate_exact_synonym VO:0001144 IAO:0000118
WARN duplicate_exact_synonym VO:0020358 IAO:0000118
Expand Down Expand Up @@ -957,6 +964,9 @@ WARN duplicate_exact_synonym VO:0020465 IAO:0000118
WARN duplicate_exact_synonym VO:0020466 IAO:0000118
WARN duplicate_exact_synonym VO:0020467 IAO:0000118
WARN duplicate_exact_synonym VO:0020468 IAO:0000118
WARN duplicate_exact_synonym VO:0010347 IAO:0000118
WARN duplicate_exact_synonym VO:0010357 IAO:0000118
WARN duplicate_exact_synonym VO:0010358 IAO:0000118
WARN duplicate_exact_synonym VO:0001347 IAO:0000118
WARN duplicate_exact_synonym VO:0005419 IAO:0000118
WARN duplicate_exact_synonym VO:0001017 IAO:0000118
Expand All @@ -965,12 +975,22 @@ WARN duplicate_exact_synonym NCBITaxon:38568 oboInOwl:hasExactSynonym
WARN duplicate_exact_synonym NCBITaxon:5658 oboInOwl:hasExactSynonym
WARN duplicate_exact_synonym VO:0019747 IAO:0000118
WARN duplicate_exact_synonym VO:0019757 IAO:0000118
WARN duplicate_exact_synonym VO:0010337 IAO:0000118
WARN duplicate_exact_synonym VO:0010346 IAO:0000118
WARN duplicate_exact_synonym VO:0010345 IAO:0000118
WARN duplicate_exact_synonym VO:0010368 IAO:0000118
WARN duplicate_exact_synonym VO:0010369 IAO:0000118
WARN duplicate_exact_synonym VO:0000642 IAO:0000118
WARN duplicate_exact_synonym VO:0010336 IAO:0000118
WARN duplicate_exact_synonym NCBITaxon:117565 oboInOwl:hasExactSynonym
WARN duplicate_exact_synonym NCBITaxon:7898 oboInOwl:hasExactSynonym
WARN duplicate_exact_synonym VO:0000942 IAO:0000118
WARN duplicate_exact_synonym VO:0003169 IAO:0000118
WARN duplicate_exact_synonym VO:0000738 IAO:0000118
WARN duplicate_exact_synonym VO:0003106 IAO:0000118
WARN duplicate_exact_synonym VO:0010362 IAO:0000118
WARN duplicate_exact_synonym VO:0010371 IAO:0000118
WARN duplicate_exact_synonym VO:0010372 IAO:0000118
WARN duplicate_label_synonym CHEBI:15882 oboInOwl:hasExactSynonym phenol
WARN duplicate_label_synonym CHEBI:16199 oboInOwl:hasExactSynonym urea
WARN duplicate_label_synonym CHEBI:16842 oboInOwl:hasExactSynonym formaldehyde
Expand Down Expand Up @@ -1171,6 +1191,7 @@ WARN missing_definition NCBITaxon:117571 IAO:0000115
WARN missing_definition NCBITaxon:11768 IAO:0000115
WARN missing_definition NCBITaxon:11901 IAO:0000115
WARN missing_definition NCBITaxon:119088 IAO:0000115
WARN missing_definition NCBITaxon:119210 IAO:0000115
WARN missing_definition NCBITaxon:11974 IAO:0000115
WARN missing_definition NCBITaxon:11976 IAO:0000115
WARN missing_definition NCBITaxon:11978 IAO:0000115
Expand Down Expand Up @@ -12295,33 +12316,41 @@ WARN missing_obsolete_label VO:0002821 rdfs:label B. melitensis WR201 (16M-delta
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/RO_0002259 rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/chebi#3_STAR rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/cl#blood_and_immune_upper_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/cl#cellxgene_subset rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/cl#general_cell_types_upper_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_AGR_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_CFDE_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_FlyBase_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_GXD_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_IEDB_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_MGI_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_RAD_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_cancer_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_infectious_disease_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#DO_rare_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#GOLD rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#NCIthesaurus rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#TopNodes_DOcancerslim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#gram-negative_bacterial_infectious_disease rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#gram-positive_bacterial_infectious_disease rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#sexually_transmitted_infectious_disease rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#tick-borne_infectious_disease rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/doid#zoonotic_infectious_disease rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#gocheck_do_not_manually_annotate rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#gocheck_do_not_annotate rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_agr rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_candida rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_chembl rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_drosophila rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_euk_cellular_processes_ribbon rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_flybase_ribbon rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_metagenomics rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_mouse rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_pir rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_plant rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_pombe rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_prokaryote rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_prokaryote_ribbon rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_yeast rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/go#prokaryote_subset rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/pato#attribute_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/pato#disposition_slim rdfs:subPropertyOf
WARN missing_subset_declaration http://purl.oboInOwllibrary.org/oboInOwl/pato#mpath_slim rdfs:subPropertyOf
Expand Down Expand Up @@ -12865,6 +12894,7 @@ INFO lowercase_definition VO:0005503 IAO:0000115 a grouping class for vaccines f
INFO lowercase_definition VO:0005505 IAO:0000115 a grouping class for vaccines for specific platforms
INFO lowercase_definition VO:0007098 IAO:0000115 "rime/boost vaccination proved to be of no advantage or even detrimental in therapeutic settings in B16F1 and transgenic adenocarcinoma of the mouse prostate (TRAMP) models, respectively"
INFO lowercase_definition VO:0007287 IAO:0000115 "cancer vaccine consisting of autologous dendritic cells transfected with autologous tumor mRNA and the human CD40 ligand (CD40L) gene with immunostimulatory and antitumor activities. Vaccination with autologous dendritic cell-autologous tumor mRNA-human CD40L vaccine may elicit a cytotoxic T cell response against tumor cells from which the autologous tumor mRNA was derived. When expressed by dendritic cells, tumor antigens and the co-stimulatory molecule CD40L, which binds to CD40 receptors on antigen presenting cells (APC), facilitate both humoral and cellular immune responses against tumor cells."
INFO lowercase_definition VO:0010347 IAO:0000115 "(HSA) - ProQuad vaccine is a vaccine indicated for active immunization for the prevention of measles, mumps, rubella, and varicella in children 12 months through 12 years of age."
INFO lowercase_definition VO:0010751 IAO:0000115 a protein from a bacterium
INFO lowercase_definition VO:0010754 IAO:0000115 a protein from a virus
INFO lowercase_definition VO:0010755 IAO:0000115 a protein from a parasite
Expand Down
2 changes: 1 addition & 1 deletion src/imports/CHEBI_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -1157,5 +1157,5 @@



<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->

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