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@ugSUBMARINE

ugSUBMARINE

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ug StructUral Biology MoleculAR dynamIcs machiNe lEarning

Trying to find solutions for questions concerning proteins

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  1. image-dms image-dms Public

    Predicting mutation effects based on deep mutational scanning data

    Python 3

  2. structural-properties structural-properties Public

    Calculate protein structure properties

    Python

  3. shortest-path shortest-path Public

    Find shortest path between selected residues in a protein structure

    Python

  4. motif-search motif-search Public

    Searching for motifs / side chain constellations in a proteins structure

    Python 1 1

  5. af3jobs af3jobs Public

    Generate JSON job files for AlphaFold3

    Python 1

  6. local-colabfold-server local-colabfold-server Public

    Colabfold / Alphafold3 web interface and job scheduler

    Python

Repositories

Showing 10 of 11 repositories
  • local-colabfold-server Public

    Colabfold / Alphafold3 web interface and job scheduler

    ugSUBMARINE/local-colabfold-server’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 27, 2024
  • af3jobs Public

    Generate JSON job files for AlphaFold3

    ugSUBMARINE/af3jobs’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 25, 2024
  • shortest-path Public

    Find shortest path between selected residues in a protein structure

    ugSUBMARINE/shortest-path’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 4, 2024
  • motif-search Public

    Searching for motifs / side chain constellations in a proteins structure

    ugSUBMARINE/motif-search’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Nov 4, 2024
  • image-dms Public

    Predicting mutation effects based on deep mutational scanning data

    ugSUBMARINE/image-dms’s past year of commit activity
    Python 3 MIT 0 0 5 Updated Nov 4, 2024
  • utils Public

    small scripts for different needs

    ugSUBMARINE/utils’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Aug 31, 2024
  • psatm Public

    Create pseudoatoms at the centroid of the catalytic atoms of a residue

    ugSUBMARINE/psatm’s past year of commit activity
    Rust 0 MIT 0 0 0 Updated Mar 26, 2024
  • structural-properties Public

    Calculate protein structure properties

    ugSUBMARINE/structural-properties’s past year of commit activity
    Python 0 MIT 0 0 5 Updated Jun 26, 2023
  • statistics-apps Public

    Dash apps, biostatistics

    ugSUBMARINE/statistics-apps’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 2, 2023
  • mcerp Public Forked from lpldmller/mcerp

    Real-time latin-hypercube sampling-based Monte Carlo ERror Propagation

    ugSUBMARINE/mcerp’s past year of commit activity
    Python 0 BSD-3-Clause 27 0 0 Updated Mar 3, 2023
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