Thompson subcycling for develop#595
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…-community#595) * Change the format of domain restart files to netcdf4 and set chunksizes * Remove nc_format="netcdf4" argument when opening restart files * Set chunksize of zaxis and time axis to 1 * Update clm_lake and rrfs_sd modules to support chunksizes * Make quilting restart files identical to fms files
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PR Checklist
Ths PR is up-to-date with the top of all sub-component repositories except for those sub-components which are the subject of this PR. Please consult the ufs-weather-model wiki if you are unsure how to do this.
This PR has been tested using a branch which is up-to-date with the top of all sub-component repositories except for those sub-components which are the subject of this PR
An Issue describing the work contained in this PR has been created either in the subcomponent(s) or in the ufs-weather-model. The Issue should be created in the repository that is most relevant to the changes in contained in the PR. The Issue and the dependent sub-component PR
are specified below.
If new or updated input data is required by this PR, it is clearly stated in the text of the PR.
Description
Implement a subcycling capability for Thompson MP in CCPP and exercise it in the UFS regression tests. This ufs-weather-model PR only updates the submodule pointer for fv3atm for the changes w.r.t. Thompson MP described in the associated PRs below.
Additional changes:
ufs_hera.gnu_debugcompile.shto copy the correct modulefile when DEBUG is usedThe changes to the suite FV3_GSD_noah/FV3_GFS_v16_thompspn (run Thompson MP with 4/2 subcycles) change the answer of several Thompson MP based regression tests. No new input data required.
Issue(s) addressed
Fixes #596
Testing
Preliminary regression testing on Hera with GNU and Intel against existing baseline (2021/05/26): all tests that are expected to pass do pass, and all tests that are expected to fail do fail with b4b mismatches (but they all run to completion):
rt_hera_gnu_verify_against_existing.log
rt_hera_gnu_verify_against_existing_fail_test.log
rt_hera_initel_verify_against_existing.log
rt_hera_initel_verify_against_existing_fail_test.log
Full regression tests will be run on all tier-1 platforms when it is time to commit.
Dependencies
NCAR/ccpp-physics#666
NCAR/ccpp-framework#376
NOAA-EMC/ufsatm#316
#595