CMake Atmosphere Dycore Generalization + Fix for JEDI cubed sphere grid #2708

[scrasmussen]

Commit Queue Requirements:

• Fill out all sections of this template.
• All sub component pull requests have been reviewed by their code managers.
• Run the full Intel+GNU RT suite (compared to current baselines) on either Hera/Derecho/Hercules
• Commit 'test_changes.list' from previous step

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Description:

Changes from @dustinswales and @scrasmussen.

• This PR reorganizes the project directory structure to allow multiple dycores. It isolates the FV3 dycore.
• Variable name changes follow the pattern of fv3atm -> ufsatm, fv3atm -> ufsatm_fv3
• This work was done to allow the imminent addition of the MPAS dycore and other dycores in the future.

Commit Message:

* UFSWM:
  * reorganize project structure to allow multiple dycores. Isolate FV3 dycore. cmake-atmosphere-generalization branch. Reorganize project structure to allow multiple dycores.
  * Fix for JEDI cubed sphere grid.
* FV3:
  * Reorganize project structure to allow multiple dycores. Isolate FV3 dycore. Some more reorganization to isolate the FV3 dycore coupling.
  * Fix for JEDI cubed sphere grid.

Priority:

• Normal

Git Tracking

UFSWM:

• Closes Update FV3ATM Cmakelists #2515

Sub component Pull Requests:

• FV3: CMake Atmosphere Dycore Generalization + Change BUILD_TESTING to BUILD_CI_TESTING in CMake, to allow ufs-weather-model to use BUILD_TESTING #920 + Fix for JEDI cubed sphere grid #951 NOAA-EMC/ufsatm#931

UFSWM Blocking Dependencies:

• None

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Changes

Regression Test Changes (Please commit test_changes.list):

• No Baseline Changes. RT log is on Hera at /scratch1/BMC/gmtb/Dustin.Swales/UFS/MPAS/soren/fv3atm-cmake-generalization-0206/tests/logs/RegressionTests_hera.log. I don't have access to Hera to commit test_changes.list

Input data Changes:

• None.

Library Changes/Upgrades:

• No Updates

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Testing Log:

• RDHPCS
  • Hera
  • Orion
  • Hercules
  • GaeaC5
  • GaeaC6
  • Derecho
• WCOSS2
  • Dogwood/Cactus
  • Acorn
• CI
• opnReqTest (complete task if unnecessary)

[jkbk2004]

@scrasmussen can you sync up branches?

[grantfirl]

@scrasmussen can you sync up branches?

@jkbk2004 @scrasmussen I synced up these branches for him. This should be ready to test, I think.

[jkbk2004]

We can start merging process.