Ignore empty fv3atm output bundle

[DusanJovic-NOAA]

Description

Fix model crash if one or the fv3atm output bundles does not have any field. See: NOAA-EMC/ufsatm#676

Input data additions/changes

• No changes are expected to input data.
• Changes are expected to input data:
  • New input data.
  • Updated input data.

Anticipated changes to regression tests:

• No changes are expected to any regression test.
• Changes are expected to the following tests:

Subcomponents involved:

• AQM
• CDEPS
• CICE
• CMEPS
• CMakeModules
• FV3
• GOCART
• HYCOM
• MOM6
• NOAHMP
• WW3
• stochastic_physics
• none

Library Updates/Changes

• Not Needed
• Create separate issue in JCSDA/spack-stack asking for update to library. Include library name, library version.
• Add issue link from JCSDA/spack-stack following this item

Combined with PR's (If Applicable):

Commit Queue Checklist:

• Link PR's from all sub-components involved in section below
• Confirm reviews completed in ALL sub-component PR's
• Add all appropriate labels to this PR.
• Run full RT suite on either Hera/Cheyenne AND attach log to a PR comment.
• Add list of any failed regression tests to "Anticipated changes to regression tests" section.

Linked PR's and Issues:

Depends on NOAA-EMC/ufsatm/issues/676

• Depends on fv3atm Sub-pr - (Ignore empty output bundle NOAA-EMC/ufsatm#679)

Testing Day Checklist:

• This PR is up-to-date with the top of all sub-component repositories except for those sub-components which are the subject of this PR.
• Move new/updated input data on RDHPCS Hera and propagate input data changes to all supported systems.

Testing Log (for CM's):

• RDHPCS
  • Hera
  • Orion
  • Jet
  • Gaea
  • Cheyenne
• WCOSS2
  • Dogwood/Cactus
  • Acorn
• CI
  • Completed
• opnReqTest
  • N/A
  • Log attached to comment

[jkbk2004]

@DusanJovic-NOAA We consider to combine this pr with #1811. can you sync up branch? so we can prepare.

[jkbk2004]

@DusanJovic-NOAA Once #1815 is ready, we will let #1815 go first though.

[DusanJovic-NOAA]

My branches are updated.

[jkbk2004]

@DusanJovic-NOAA Can you take a look at /scratch1/NCEPDEV/stmp2/Jong.Kim/FV3_RT/rt_98984/rrfs_smoke_conus13km_fast_phy32_qr_intel ? It crashes.

[DusanJovic-NOAA]

@DusanJovic-NOAA Can you take a look at /scratch1/NCEPDEV/stmp2/Jong.Kim/FV3_RT/rt_98984/rrfs_smoke_conus13km_fast_phy32_qr_intel ? It crashes.

I just updated FV3 submodule.

[DusanJovic-NOAA]

RegressionTests_hera.log

[zach1221]

Hello, @DusanJovic-NOAA . PR 1794 has been merged. Can you sync up your branch with develop and resolve conflicts here? That way we can begin testing through this PR next.

[BrianCurtis-NOAA]

@DusanJovic-NOAA @zach1221 could we add #1813 to this?

[zach1221]

@DusanJovic-NOAA @zach1221 could we add #1813 to this?

I'm ok with that, if Dusan is. I can just copy over the template and commit directly to this PR.

[DusanJovic-NOAA]

@DusanJovic-NOAA @zach1221 could we add #1813 to this?

I'm ok with that, if Dusan is. I can just copy over the template and commit directly to this PR.

I'm also ok with that.

[FernandoAndrade-NOAA]

Jenkins ci log is attached, ORTs passed.
ufs-weather-model » ort-docker-pipeline » PR-1825 #1 Console [Jenkins].txt

[zach1221]

Testing is complete. I'll follow up on the fv3atm sub-pr to begin the merging process.

[BrianCurtis-NOAA]

New FV3 hash: NOAA-EMC/ufsatm@1158696

[zach1221]

@DusanJovic-NOAA fv3atm sub-pr #679 has been merged. Please update the submodule point revert the change in gitmodules.

[zach1221]

Closes #1813