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Merged
DusanJovic-NOAA merged 8 commits into from
Jan 10, 2020
Merged

ufs-community develop update from NCAR dtc/develop 2019/12/17 #18

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f878b97
Merge NCAR dtc/develop into NOAA-EMC develop, merge selected updates …
climbfuji Dec 27, 2019
74aac99
Turn of WW3 coupled tests on jet and gaea, because both systems are n…
climbfuji Dec 30, 2019
0934112
Regression test logs on jet.intel
climbfuji Dec 30, 2019
e56f0c5
Update regression test baselines to develop-20191230
climbfuji Dec 30, 2019
52200d1
Regression test logs for hera.intel and gaea.intel (Intel 18)
climbfuji Dec 30, 2019
6694957
Regression test logs (rt.sh and NEMSCompsetRun) for hera.intel and wc…
climbfuji Dec 31, 2019
40e7ffb
Regression test logs (rt.sh and NEMSCompsetRun) for wcoss_cray
climbfuji Dec 31, 2019
110e5bc
Revert change to .gitmodules and update submodule pointer for FV3
climbfuji Jan 10, 2020
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4 changes: 2 additions & 2 deletions .gitmodules
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Original file line number Diff line number Diff line change
Expand Up @@ -8,8 +8,8 @@
branch = develop
[submodule "FMS"]
path = FMS
url = https://github.com/NOAA-EMC/FMS
branch = GFS-FMS
url = https://github.com/NOAA-GFDL/FMS
branch = master
Comment thread
DusanJovic-NOAA marked this conversation as resolved.
[submodule "WW3"]
path = WW3
url = https://github.com/NOAA-EMC/WW3
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2 changes: 1 addition & 1 deletion CMakeLists.txt
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Expand Up @@ -125,7 +125,7 @@ add_library(
FMS/mosaic/interp.c
FMS/mosaic/mosaic_util.c
FMS/mosaic/read_mosaic.c
FMS/mpp/affinity.c
FMS/affinity/affinity.c
FMS/mpp/nsclock.c
FMS/mpp/threadloc.c
)
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2 changes: 1 addition & 1 deletion FMS
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Submodule FMS updated 342 files
2 changes: 1 addition & 1 deletion FV3
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Submodule FV3 updated from 869374 to b1ddd6
35 changes: 35 additions & 0 deletions cmake/configure_cheyenne.gnu.cmake
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@@ -0,0 +1,35 @@
message("")
message("Setting configuration for $ENV{CMAKE_Platform}")
message("")

get_filename_component (C_COMPILER_NAME ${CMAKE_C_COMPILER} NAME)
get_filename_component (CXX_COMPILER_NAME ${CMAKE_CXX_COMPILER} NAME)
get_filename_component (Fortran_COMPILER_NAME ${CMAKE_Fortran_COMPILER} NAME)
message("C compiler: ${CMAKE_C_COMPILER_ID} ${CMAKE_C_COMPILER_VERSION} (${C_COMPILER_NAME})")
message("CXX compiler: ${CMAKE_CXX_COMPILER_ID} ${CMAKE_CXX_COMPILER_VERSION} (${CXX_COMPILER_NAME})")
message("Fortran compiler: ${CMAKE_Fortran_COMPILER_ID} ${CMAKE_Fortran_COMPILER_VERSION} (${Fortran_COMPILER_NAME})")
message("")

option(DEBUG "Enable DEBUG mode" OFF)
option(REPRO "Enable REPRO mode" OFF)
option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" OFF)

option(INLINE_POST "Enable inline post" OFF)

include( cmake/${CMAKE_Fortran_COMPILER_ID}.cmake )

set(NEMSIO_INC $ENV{NEMSIO_INC})
set(POST_INC $ENV{POST_INC})
set(NCEP_LIBS $ENV{POST_LIB} $ENV{NEMSIO_LIB} $ENV{G2_LIB4} $ENV{G2TMPL_LIB} $ENV{BACIO_LIB4} $ENV{SP_LIBd} $ENV{W3EMC_LIBd} $ENV{W3NCO_LIBd} $ENV{CRTM_LIB} $ENV{PNG_LIB} $ENV{JASPER_LIB} $ENV{Z_LIB})

set(ESMF_MOD ${ESMF_F90COMPILEPATHS})
set(ESMF_LIBS "${ESMF_F90ESMFLINKRPATHS} ${ESMF_F90ESMFLINKPATHS} ${ESMF_F90ESMFLINKLIBS}")

set(NETCDF_INC_DIR $ENV{NETCDF}/include)
set(NETCDF_LIBDIR $ENV{NETCDF}/lib)
set(NETCDF_LIBS -L$ENV{NETCDF}/lib -lnetcdff -lnetcdf)

message("")
35 changes: 35 additions & 0 deletions cmake/configure_cheyenne.intel-impi.cmake
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@@ -0,0 +1,35 @@
message("")
message("Setting configuration for $ENV{CMAKE_Platform}")
message("")

get_filename_component (C_COMPILER_NAME ${CMAKE_C_COMPILER} NAME)
get_filename_component (CXX_COMPILER_NAME ${CMAKE_CXX_COMPILER} NAME)
get_filename_component (Fortran_COMPILER_NAME ${CMAKE_Fortran_COMPILER} NAME)
message("C compiler: ${CMAKE_C_COMPILER_ID} ${CMAKE_C_COMPILER_VERSION} (${C_COMPILER_NAME})")
message("CXX compiler: ${CMAKE_CXX_COMPILER_ID} ${CMAKE_CXX_COMPILER_VERSION} (${CXX_COMPILER_NAME})")
message("Fortran compiler: ${CMAKE_Fortran_COMPILER_ID} ${CMAKE_Fortran_COMPILER_VERSION} (${Fortran_COMPILER_NAME})")
message("")

option(DEBUG "Enable DEBUG mode" OFF)
option(REPRO "Enable REPRO mode" OFF)
option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)

option(INLINE_POST "Enable inline post" OFF)

include( cmake/${CMAKE_Fortran_COMPILER_ID}.cmake )

set(NEMSIO_INC $ENV{NEMSIO_INC})
set(POST_INC $ENV{POST_INC})
set(NCEP_LIBS $ENV{POST_LIB} $ENV{NEMSIO_LIB} $ENV{G2_LIB4} $ENV{G2TMPL_LIB} $ENV{BACIO_LIB4} $ENV{SP_LIBd} $ENV{W3EMC_LIBd} $ENV{W3NCO_LIBd} $ENV{CRTM_LIB} $ENV{PNG_LIB} $ENV{JASPER_LIB} $ENV{Z_LIB})

set(ESMF_MOD ${ESMF_F90COMPILEPATHS})
set(ESMF_LIBS "${ESMF_F90ESMFLINKRPATHS} ${ESMF_F90ESMFLINKPATHS} ${ESMF_F90ESMFLINKLIBS}")

set(NETCDF_INC_DIR $ENV{NETCDF}/include)
set(NETCDF_LIBDIR $ENV{NETCDF}/lib)
set(NETCDF_LIBS -L$ENV{NETCDF}/lib -lnetcdff -lnetcdf)

message("")
35 changes: 35 additions & 0 deletions cmake/configure_cheyenne.intel.cmake
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@@ -0,0 +1,35 @@
message("")
message("Setting configuration for $ENV{CMAKE_Platform}")
message("")

get_filename_component (C_COMPILER_NAME ${CMAKE_C_COMPILER} NAME)
get_filename_component (CXX_COMPILER_NAME ${CMAKE_CXX_COMPILER} NAME)
get_filename_component (Fortran_COMPILER_NAME ${CMAKE_Fortran_COMPILER} NAME)
message("C compiler: ${CMAKE_C_COMPILER_ID} ${CMAKE_C_COMPILER_VERSION} (${C_COMPILER_NAME})")
message("CXX compiler: ${CMAKE_CXX_COMPILER_ID} ${CMAKE_CXX_COMPILER_VERSION} (${CXX_COMPILER_NAME})")
message("Fortran compiler: ${CMAKE_Fortran_COMPILER_ID} ${CMAKE_Fortran_COMPILER_VERSION} (${Fortran_COMPILER_NAME})")
message("")

option(DEBUG "Enable DEBUG mode" OFF)
option(REPRO "Enable REPRO mode" OFF)
option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)

option(INLINE_POST "Enable inline post" OFF)

include( cmake/${CMAKE_Fortran_COMPILER_ID}.cmake )

set(NEMSIO_INC $ENV{NEMSIO_INC})
set(POST_INC $ENV{POST_INC})
set(NCEP_LIBS $ENV{POST_LIB} $ENV{NEMSIO_LIB} $ENV{G2_LIB4} $ENV{G2TMPL_LIB} $ENV{BACIO_LIB4} $ENV{SP_LIBd} $ENV{W3EMC_LIBd} $ENV{W3NCO_LIBd} $ENV{CRTM_LIB} $ENV{PNG_LIB} $ENV{JASPER_LIB} $ENV{Z_LIB})

set(ESMF_MOD ${ESMF_F90COMPILEPATHS})
set(ESMF_LIBS "${ESMF_F90ESMFLINKRPATHS} ${ESMF_F90ESMFLINKPATHS} ${ESMF_F90ESMFLINKLIBS}")

set(NETCDF_INC_DIR $ENV{NETCDF}/include)
set(NETCDF_LIBDIR $ENV{NETCDF}/lib)
set(NETCDF_LIBS -L$ENV{NETCDF}/lib -lnetcdff -lnetcdf)

message("")
3 changes: 3 additions & 0 deletions compsets/fv3.input
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Expand Up @@ -201,7 +201,10 @@ fv3_defaults = {
MAKE_NH='.T.'
MOUNTAIN='.F.'
SATMEDMF='.F.'
ISATMEDMF='0'
HYBEDMF='.T.'
IMFSHALCNV='2'
IMFDEEPCNV='2'
LHEATSTRG='.F.'
LGFDLMPRAD='.F.'
EFFR_IN='.F.'
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4 changes: 2 additions & 2 deletions compsets/hera.input
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Expand Up @@ -30,8 +30,8 @@ platform hera.intel {
# INPUTS is the input directory, which should contain fix and parm
# files, plus any restarts or other inputs.

BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"
INPUTS="@[BASELINE]"

default_resources={
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16 changes: 8 additions & 8 deletions compsets/wcoss.input
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Expand Up @@ -26,8 +26,8 @@ platform wcoss.phase2 {
LONG_TEST_QUEUE='&LONGQ;'
BUILD_QUEUE='&BUILDQ;'
MACHINE_ID='wcoss.phase2'
BASELINE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE_TEMPLATE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"
BASELINE_TEMPLATE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"

default_resources={
TASKS=156
Expand Down Expand Up @@ -121,8 +121,8 @@ platform wcoss.phase1 {
cores_per_node=16
cpus_per_core=2
MACHINE_ID='wcoss.phase1'
BASELINE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE_TEMPLATE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"
BASELINE_TEMPLATE="/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"

# WCOSS Phase 2 has been slow of late.
DEFAULT_TEST_WALLTIME=2700
Expand Down Expand Up @@ -206,8 +206,8 @@ platform wcoss_dell_p3 {
LONG_TEST_QUEUE='&LONGQ;'
BUILD_QUEUE='&BUILDQ;'

BASELINE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE_TEMPLATE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"
BASELINE_TEMPLATE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"

default_resources={
TASKS=156
Expand Down Expand Up @@ -304,8 +304,8 @@ platform wcoss.cray {
BUILD_WALLTIME="3600"
DEFAULT_TEST_WALLTIME=1800

BASELINE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE_TEMPLATE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191217"
BASELINE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"
BASELINE_TEMPLATE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/NEMSfv3gfs/develop-20191230"

execution_time_modules=[[[
module load alps
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4 changes: 2 additions & 2 deletions conf/configure.fv3.macosx.gnu
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Expand Up @@ -122,8 +122,8 @@ CPPDEFS += -DMULTI_GASES
endif

FFLAGS_OPT = -O2 -g -fno-range-check
FFLAGS_REPRO = -O2 -g -fbacktrace -fno-range-check
FFLAGS_DEBUG = -g -O0 -ggdb -fno-unsafe-math-optimizations -frounding-math -fsignaling-nans -Wuninitialized -ffpe-trap=invalid,zero,overflow -fbounds-check -fbacktrace -fno-range-check -Wall
FFLAGS_REPRO = -O0 -g -fbacktrace -fno-range-check
FFLAGS_DEBUG = -g -O0 -ggdb -fno-unsafe-math-optimizations -frounding-math -fsignaling-nans -ffpe-trap=invalid,zero,overflow -fbounds-check -fbacktrace -fno-range-check -Wall

TRANSCENDENTALS :=
FFLAGS_OPENMP = -fopenmp
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