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[develop] Updated modulefiles for Cheyenne, Hera, Jet, Gaea, Orion #419

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update build_cheyenne_gnu: hpc-stack, miniconda3, rocoto
natalie-perlin Oct 14, 2022
125a7de
update build_cheyenne_intel: hpc-stack, miniconda3, rocoto
natalie-perlin Oct 14, 2022
335df6d
update wflow_cheyenne: paths for miniconda3, rocoto
natalie-perlin Oct 14, 2022
6df03f9
update build_hera_intel: hpc-stack, miniconda3
natalie-perlin Oct 14, 2022
9d2055c
update wflow_hera: hpc-stack, miniconda3
natalie-perlin Oct 14, 2022
869dcd8
update build_jet_intel: hpc-stack, miniconda3
natalie-perlin Oct 14, 2022
4ce8350
update wflow_jet: miniconda3 path
natalie-perlin Oct 14, 2022
a61de0d
update build_orion_intel: hpc-stack, miniconda3
natalie-perlin Oct 14, 2022
bdbfffa
update wflow_orion: EPIC-managed path miniconda3
natalie-perlin Oct 14, 2022
b128d48
Update and rename conda_regional_workflow to miniconda_regional_workflow
natalie-perlin Oct 14, 2022
5bc02d3
Update miniconda_regional_workflow
natalie-perlin Oct 14, 2022
fec443e
Update get_extrn_ics.local
natalie-perlin Oct 14, 2022
a67c502
Update get_extrn_lbcs.local
natalie-perlin Oct 14, 2022
79ac1cc
Update get_extrn_ics.local
natalie-perlin Oct 14, 2022
a37384b
Update make_grid.local
natalie-perlin Oct 14, 2022
a084d63
Update make_ics.local
natalie-perlin Oct 14, 2022
fe23645
Update make_lbcs.local
natalie-perlin Oct 14, 2022
7ea5202
Update and rename make_orog.hardcoded to make_orog.local
natalie-perlin Oct 14, 2022
7db26c9
Update run_fcst.local
natalie-perlin Oct 14, 2022
c701f03
Update run_vx.local
natalie-perlin Oct 14, 2022
bb864e8
Update miniconda_regional_workflow
natalie-perlin Oct 14, 2022
a5e1ca2
Update run_vx.local
natalie-perlin Oct 14, 2022
3893854
Update get_obs.local
natalie-perlin Oct 14, 2022
bec0ff7
Update get_extrn_ics.local
natalie-perlin Oct 14, 2022
9677dd4
Update get_extrn_lbcs.local
natalie-perlin Oct 14, 2022
aceaf50
Update make_lbcs.local
natalie-perlin Oct 14, 2022
1cc16dd
Update run_vx.local
natalie-perlin Oct 14, 2022
c4d8d93
Update gaea.yaml, met and metplus paths
natalie-perlin Oct 14, 2022
40875cd
Update hera.yaml, met and metplus paths
natalie-perlin Oct 14, 2022
4dbf9a2
Update jet.yaml, met and metplus paths
natalie-perlin Oct 14, 2022
b27d743
Update orion.yaml, met and metplus paths
natalie-perlin Oct 14, 2022
dc3e609
Update miniconda_regional_workflow
natalie-perlin Oct 14, 2022
f3e89d5
update run_vx.local
natalie-perlin Oct 14, 2022
f344c38
Update miniconda_regional_workflow
natalie-perlin Oct 14, 2022
f48a9a1
Create run_vx.local
natalie-perlin Oct 14, 2022
ba2b864
Update build_jet_intel
natalie-perlin Oct 17, 2022
643fa59
Update wflow_jet
natalie-perlin Oct 17, 2022
9d2094e
Create make_orog.local
natalie-perlin Oct 20, 2022
5ad21cc
Update build_jet_intel
natalie-perlin Oct 20, 2022
ba56eb4
Update build_hera_intel
natalie-perlin Oct 20, 2022
fd22d4e
Update build_jet_intel
natalie-perlin Oct 21, 2022
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10 changes: 6 additions & 4 deletions modulefiles/build_cheyenne_gnu
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Expand Up @@ -8,17 +8,19 @@ proc ModulesHelp { } {
module-whatis "Loads libraries needed for building SRW on Cheyenne"

module load cmake/3.22.0
module load python/3.7.9
module load ncarenv/1.3
module load gnu/11.2.0
module load gnu/12.1.0
Comment on lines +13 to +12

@MichaelLueken MichaelLueken Oct 18, 2022

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Why was the compiler version updated to the latest on Cheyenne? Would it be possible to bring this back down to gnu/11.2.0?

@natalie-perlin natalie-perlin Oct 19, 2022

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The attempt was to use the latest available compiler. The same libraries for the gnu/11.2.0 will be built wehn cheyenne comes back from the maintenance, if this is preferred.

@MichaelLueken MichaelLueken Oct 19, 2022

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Thanks @natalie-perlin. Yes, please built the same libraries for gnu/11.2.0 on Cheyenne once it is back up.

module load mpt/2.25
setenv MKLROOT /glade/u/apps/opt/intel/2022.1/mkl/latest
module load ncarcompilers/0.5.0
module unload netcdf

module use /glade/work/epicufsrt/GMTB/tools/gnu/11.2.0/hpc-stack-v1.2.0/modulefiles/stack
module use /glade/work/epicufsrt/contrib/miniconda3/modulefiles
module load miniconda3/4.12.0

module use /glade/work/epicufsrt/contrib/hpc-stack/gnu12.1.0/modulefiles/stack
module load hpc/1.2.0
module load hpc-gnu/11.2.0
module load hpc-gnu/12.1.0
module load hpc-mpt/2.25

module load srw_common
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8 changes: 5 additions & 3 deletions modulefiles/build_cheyenne_intel
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Expand Up @@ -8,25 +8,27 @@ proc ModulesHelp { } {
module-whatis "Loads libraries needed for building SRW on Cheyenne"

module load cmake/3.22.0
module load python/3.7.9
module load ncarenv/1.3
module load intel/2022.1
module load mpt/2.25
module load mkl/2022.1
module load ncarcompilers/0.5.0
module unload netcdf

module use /glade/work/epicufsrt/GMTB/tools/intel/2022.1/hpc-stack-v1.2.0_6eb6/modulefiles/stack
module use /glade/work/epicufsrt/contrib/miniconda3/modulefiles
module load miniconda3/4.12.0

module use /glade/work/epicufsrt/contrib/hpc-stack/intel2022.1/modulefiles/stack
module load hpc/1.2.0
module load hpc-intel/2022.1
module load hpc-mpt/2.25

module load srw_common

module load netcdf/4.7.4
module load g2/3.4.5
module load esmf/8.3.0b09
module load mapl/2.11.0-esmf-8.3.0b09
module load netcdf/4.7.4
module load libpng/1.6.37
module load pio/2.5.3
module load fms/2022.01
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8 changes: 5 additions & 3 deletions modulefiles/build_hera_intel
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Expand Up @@ -7,18 +7,20 @@ proc ModulesHelp { } {

module-whatis "Loads libraries needed for building SRW on Hera"

module use /contrib/miniconda3/modulefiles
module load miniconda3/4.5.12
module use /scratch1/NCEPDEV/nems/role.epic/miniconda3/modulefiles
module load miniconda3/4.12.0

module use /contrib/sutils/modulefiles
module load sutils

module load cmake/3.20.1

module use /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/modulefiles/stack
module use /scratch1/NCEPDEV/nems/role.epic/hpc-stack/libs/intel-2022.2.0/modulefiles/stack
module load hpc/1.2.0
module load hpc-intel/2022.1.2
module load hpc-impi/2022.1.2
module load intel/2022.1.2
module load impi/2022.1.2

module load srw_common

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8 changes: 6 additions & 2 deletions modulefiles/build_jet_intel
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Expand Up @@ -10,10 +10,14 @@ module-whatis "Loads libraries needed for building SRW on JET"
module use /contrib/sutils/modulefiles
module load sutils

module load cmake/3.20.1
module use /mnt/lfs4/HFIP/hfv3gfs/role.epic/miniconda3/modulefiles
module load miniconda3/4.12.0

module use /lfs4/HFIP/hfv3gfs/nwprod/hpc-stack/libs/modulefiles/stack
module load cmake/3.20.1
module load intel/2022.1.2
module load impi/2022.1.2

module use /mnt/lfs4/HFIP/hfv3gfs/role.epic/hpc-stack/libs/intel-2022.1.2/modulefiles/stack
module load hpc/1.2.0
module load hpc-intel/2022.1.2
module load hpc-impi/2022.1.2
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5 changes: 3 additions & 2 deletions modulefiles/build_orion_intel
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Expand Up @@ -10,9 +10,10 @@ module-whatis "Loads libraries needed for building SRW on Orion"
module load contrib noaatools

module load cmake/3.22.1
module load python/3.9.2
module use /work/noaa/epic-ps/role-epic-ps/miniconda3/modulefiles
module load miniconda3/4.12.0

module use /apps/contrib/NCEP/libs/hpc-stack/modulefiles/stack
module use /work/noaa/epic-ps/role-epic-ps/hpc-stack/libs/intel-2022.1.2/modulefiles/stack
module load hpc/1.2.0
module load hpc-intel/2022.1.2
module load hpc-impi/2022.1.2
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5 changes: 0 additions & 5 deletions modulefiles/tasks/cheyenne/conda_regional_workflow
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4 changes: 1 addition & 3 deletions modulefiles/tasks/cheyenne/get_extrn_ics.local
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@@ -1,4 +1,2 @@
#%Module

module load conda_regional_workflow

module load miniconda_regional_workflow
4 changes: 1 addition & 3 deletions modulefiles/tasks/cheyenne/get_extrn_lbcs.local
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#%Module

module load conda_regional_workflow

module load miniconda_regional_workflow
2 changes: 1 addition & 1 deletion modulefiles/tasks/cheyenne/make_grid.local
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#%Module
module load conda_regional_workflow
module load miniconda_regional_workflow
2 changes: 1 addition & 1 deletion modulefiles/tasks/cheyenne/make_ics.local
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#%Module
module load conda_regional_workflow
module load miniconda_regional_workflow
2 changes: 1 addition & 1 deletion modulefiles/tasks/cheyenne/make_lbcs.local
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#%Module
module load conda_regional_workflow
module load miniconda_regional_workflow
9 changes: 0 additions & 9 deletions modulefiles/tasks/cheyenne/make_orog.hardcoded
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2 changes: 2 additions & 0 deletions modulefiles/tasks/cheyenne/make_orog.local
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#%Module
module load miniconda_regional_workflow
6 changes: 6 additions & 0 deletions modulefiles/tasks/cheyenne/miniconda_regional_workflow
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#%Module

module use /glade/work/epicufsrt/contrib/miniconda3/modulefiles
module load miniconda3/4.12.0

setenv SRW_ENV regional_workflow
2 changes: 1 addition & 1 deletion modulefiles/tasks/cheyenne/run_fcst.local
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#%Module
module load conda_regional_workflow
module load miniconda_regional_workflow
2 changes: 1 addition & 1 deletion modulefiles/tasks/cheyenne/run_vx.local
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#%Module
module load conda_regional_workflow
module load miniconda_regional_workflow
2 changes: 0 additions & 2 deletions modulefiles/tasks/gaea/run_vx.local
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#%Module

module load miniconda_regional_workflow

prepend-path LD_LIBRARY_PATH /ncrc/sw/gaea-cle7/python/3.9/anaconda-base/envs/noaa_py3.9/lib
4 changes: 1 addition & 3 deletions modulefiles/tasks/hera/get_extrn_ics.local
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@@ -1,6 +1,4 @@
#%Module#####################################################
## Module file for get_extrn_ics task.
#############################################################
#%Module

module load hpss

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4 changes: 1 addition & 3 deletions modulefiles/tasks/hera/get_extrn_lbcs.local
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#%Module#####################################################
## Module file for get_extrn_lbcs task.
#############################################################
#%Module

module load hpss

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5 changes: 1 addition & 4 deletions modulefiles/tasks/hera/get_obs.local
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Expand Up @@ -5,7 +5,4 @@

module load hpss

module use /contrib/miniconda3/modulefiles
module load miniconda3/4.5.12

setenv SRW_ENV pygraf
module load miniconda_regional_workflow
1 change: 1 addition & 0 deletions modulefiles/tasks/hera/make_lbcs.local
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#%Module

module load miniconda_regional_workflow
4 changes: 1 addition & 3 deletions modulefiles/tasks/hera/run_vx.local
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#%Module

module use -a /contrib/anaconda/modulefiles
module load intel/18.0.5.274
module load anaconda/latest
module load miniconda_regional_workflow
2 changes: 2 additions & 0 deletions modulefiles/tasks/jet/make_orog.local
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#%Module
module load miniconda_regional_workflow
4 changes: 2 additions & 2 deletions modulefiles/tasks/jet/miniconda_regional_workflow
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#%Module
module use /contrib/miniconda3/modulefiles
module load miniconda3/4.5.12
module use /mnt/lfs4/HFIP/hfv3gfs/role.epic/miniconda3/modulefiles
module load miniconda3/4.12.0

setenv SRW_ENV regional_workflow
4 changes: 1 addition & 3 deletions modulefiles/tasks/jet/run_vx.local
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#%Module

module use -a /contrib/anaconda/modulefiles
module load intel/18.0.5.274
module load anaconda/5.3.1
module load miniconda_regional_workflow
4 changes: 2 additions & 2 deletions modulefiles/tasks/orion/miniconda_regional_workflow
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#%Module
module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles
module load miniconda3/3.8
module use /work/noaa/epic-ps/role-epic-ps/miniconda3/modulefiles
module load miniconda3/4.12.0

setenv SRW_ENV regional_workflow
3 changes: 3 additions & 0 deletions modulefiles/tasks/orion/run_vx.local
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#%Module

module load miniconda_regional_workflow
7 changes: 4 additions & 3 deletions modulefiles/wflow_cheyenne
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Expand Up @@ -8,13 +8,14 @@ proc ModulesHelp { } {
module-whatis "Loads libraries and utilities needed for running SRW on Cheyenne"

module load ncarenv
module use -a /glade/p/ral/jntp/UFS_SRW_app/modules/
module use -a /glade/work/epicufsrt/contrib/miniconda3/modulefiles
module load miniconda3
module use -a /glade/work/epicufsrt/contrib/modulefiles
module load rocoto
module load conda/latest

if { [module-info mode load] } {
puts stderr "Please do the following to activate conda:
> conda activate /glade/p/ral/jntp/UFS_SRW_app/conda/regional_workflow"
> conda activate regional_workflow"
}


4 changes: 2 additions & 2 deletions modulefiles/wflow_hera
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Expand Up @@ -9,8 +9,8 @@ module-whatis "Loads libraries needed for running SRW on Hera"

module load rocoto

module use /contrib/miniconda3/modulefiles
module load miniconda3/4.5.12
module use /scratch1/NCEPDEV/nems/role.epic/miniconda3/modulefiles
module load miniconda3/4.12.0

if { [module-info mode load] } {
puts stderr "Please do the following to activate conda:
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4 changes: 2 additions & 2 deletions modulefiles/wflow_jet
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Expand Up @@ -9,8 +9,8 @@ module-whatis "Loads libraries needed for running SRW on Jet"

module load rocoto

module use /contrib/miniconda3/modulefiles
module load miniconda3/4.5.12
module use /mnt/lfs4/HFIP/hfv3gfs/role.epic/miniconda3/modulefiles
module load miniconda3/4.12.0

if { [module-info mode load] } {
puts stderr "Please do the following to activate conda:
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4 changes: 2 additions & 2 deletions modulefiles/wflow_orion
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Expand Up @@ -9,8 +9,8 @@ module-whatis "Loads libraries needed for running SRW on Orion"

module load contrib rocoto

module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles
module load miniconda3/3.8
module use /work/noaa/epic-ps/role-epic-ps/miniconda3/modulefiles
module load miniconda3/4.12.0

if { [module-info mode load] } {
puts stderr "Please do the following to activate conda:
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4 changes: 2 additions & 2 deletions ush/machine/gaea.yaml
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Expand Up @@ -5,9 +5,9 @@ platform:
CCPA_OBS_DIR: /lustre/f2/pdata/ncep_shared/UFS_SRW_App/develop/obs_data/ccpa/proc
MRMS_OBS_DIR: /lustre/f2/pdata/ncep_shared/UFS_SRW_App/develop/obs_data/mrms/proc
NDAS_OBS_DIR: /lustre/f2/pdata/ncep_shared/UFS_SRW_App/develop/obs_data/ndas/proc
METPLUS_PATH: /usw/met/METplus/METplus-4.1.3
METPLUS_PATH: /lustre/f2/dev/role.epic/contrib/hpc-stack/intel-2021.3.0/intel-2021.3.0/metplus/4.1.3
MET_BIN_EXEC: bin
MET_INSTALL_DIR: /usw/met/10.1.2
MET_INSTALL_DIR: /lustre/f2/dev/role.epic/contrib/hpc-stack/intel-2021.3.0/intel-2021.3.0/met/10.1.2
QUEUE_DEFAULT: normal
QUEUE_FCST: normal
QUEUE_HPSS: normal
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4 changes: 2 additions & 2 deletions ush/machine/hera.yaml
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Expand Up @@ -5,9 +5,9 @@ platform:
CCPA_OBS_DIR: /scratch2/BMC/det/UFS_SRW_App/develop/obs_data/ccpa/proc
MRMS_OBS_DIR: /scratch2/BMC/det/UFS_SRW_App/develop/obs_data/mrms/proc
NDAS_OBS_DIR: /scratch2/BMC/det/UFS_SRW_App/develop/obs_data/ndas/proc
METPLUS_PATH: /contrib/METplus/METplus-4.1.1
METPLUS_PATH: /scratch1/NCEPDEV/nems/role.epic/hpc-stack/libs/intel-2022.2.0/intel-2022.2.0/metplus/4.1.3
MET_BIN_EXEC: bin
MET_INSTALL_DIR: /contrib/met/10.1.1
MET_INSTALL_DIR: /scratch1/NCEPDEV/nems/role.epic/hpc-stack/libs/intel-2022.2.0/intel-2022.2.0/met/10.1.2
DOMAIN_PREGEN_BASEDIR: /scratch2/BMC/det/UFS_SRW_App/develop/FV3LAM_pregen
PARTITION_DEFAULT: hera
QUEUE_DEFAULT: batch
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4 changes: 2 additions & 2 deletions ush/machine/jet.yaml
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Expand Up @@ -5,9 +5,9 @@ platform:
CCPA_OBS_DIR: /mnt/lfs4/BMC/wrfruc/UFS_SRW_App/develop/obs_data/ccpa/proc
MRMS_OBS_DIR: /mnt/lfs4/BMC/wrfruc/UFS_SRW_App/develop/obs_data/mrms/proc
NDAS_OBS_DIR: /mnt/lfs4/BMC/wrfruc/UFS_SRW_App/develop/obs_data/ndas/proc
METPLUS_PATH: /contrib/met/METplus/METplus-4.1.1
METPLUS_PATH: /mnt/lfs4/HFIP/hfv3gfs/role.epic/hpc-stack/libs/intel-2022.2.0/intel-2022.2.0/metplus/4.1.3
MET_BIN_EXEC: bin
MET_INSTALL_DIR: /contrib/met/10.1.1
MET_INSTALL_DIR: /mnt/lfs4/HFIP/hfv3gfs/role.epic/hpc-stack/libs/intel-2022.2.0/intel-2022.2.0/met/10.1.2
DOMAIN_PREGEN_BASEDIR: /mnt/lfs4/BMC/wrfruc/UFS_SRW_App/develop/FV3LAM_pregen
PARTITION_DEFAULT: sjet,vjet,kjet,xjet
QUEUE_DEFAULT: batch
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4 changes: 2 additions & 2 deletions ush/machine/orion.yaml
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Expand Up @@ -5,9 +5,9 @@ platform:
CCPA_OBS_DIR: /work/noaa/fv3-cam/UFS_SRW_App/develop/obs_data/ccpa/proc
MRMS_OBS_DIR: /work/noaa/fv3-cam/UFS_SRW_App/develop/obs_data/mrms/proc
NDAS_OBS_DIR: /work/noaa/fv3-cam/UFS_SRW_App/develop/obs_data/ndas/proc
METPLUS_PATH: /apps/contrib/MET/METplus/METplus-4.1.1
METPLUS_PATH: /work/noaa/epic-ps/role-epic-ps/hpc-stack/libs/intel-2022.1.2/intel-2022.1.2/metplus/4.1.3
MET_BIN_EXEC: bin
MET_INSTALL_DIR: /apps/contrib/MET/10.1.1
MET_INSTALL_DIR: /work/noaa/epic-ps/role-epic-ps/hpc-stack/libs/intel-2022.1.2/intel-2022.1.2/met/10.1.2
DOMAIN_PREGEN_BASEDIR: /work/noaa/fv3-cam/UFS_SRW_App/develop/FV3LAM_pregen
PARTITION_DEFAULT: orion
QUEUE_DEFAULT: batch
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