Added support of the NSSL CCPP suite - WoFS_v0 and WE2E tests

.github/CODEOWNERS

@@ -3,7 +3,7 @@
 
 # These owners will be the default owners for everything in the repo.
 #*       @defunkt
-*       @mkavulich @gsketefian @JeffBeck-NOAA @RatkoVasic-NOAA @BenjaminBlake-NOAA @ywangwof @chan-hoo @BenjaminBlake-NOAA @RatkoVasic-NOAA @panll @christinaholtNOAA @christopherwharrop-noaa @danielabdi-noaa @mark-a-potts @jkbk2004 @willmayfield @jwolff-ncar @dmwright526
+*       @mkavulich @gsketefian @JeffBeck-NOAA @RatkoVasic-NOAA @BenjaminBlake-NOAA @ywangwof @chan-hoo @panll @christinaholtNOAA @christopherwharrop-noaa @danielabdi-noaa @mark-a-potts @jkbk2004 @willmayfield @dmwright526 @gspetro-NOAA @natalie-perlin @EdwardSnyder-NOAA
 
 # Order is important. The last matching pattern has the most precedence.
 # So if a pull request only touches javascript files, only these owners

.github/workflows/python_unittests.yaml

@@ -0,0 +1,27 @@
+name: Python unittests
+on: [push, pull_request]
+jobs:
+
+  python_unittests:
+    name: Python unittests
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      # Install dependencies
+      - name: Install dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install python3 python3-pip netcdf-bin
+          sudo pip3 install pyyaml jinja2 f90nml
+          sudo pip3 install numpy matplotlib basemap
+
+      # Run python unittests
+      - name: Run python unittests
+        run: |
+          cd ush
+          python3 -m unittest -b python_utils/test_python_utils.py
+          python3 -m unittest -b *.py
+

modulefiles/tasks/hera/get_obs.local

@@ -7,7 +7,7 @@ module purge
 
 module load hpss
 
-module use -a /contrib/miniconda3/modulefiles
-module load miniconda3
+module use /contrib/miniconda3/modulefiles
+module load miniconda3/4.5.12
 
 setenv SRW_ENV pygraf

modulefiles/tasks/hera/miniconda_regional_workflow

@@ -1,5 +1,5 @@
 #%Module
-module use -a /contrib/miniconda3/modulefiles
-module load miniconda3
+module use /contrib/miniconda3/modulefiles
+module load miniconda3/4.5.12
 
 setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/get_extrn_ics.local

@@ -0,0 +1,7 @@
+#%Module
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow
+

modulefiles/tasks/noaacloud/get_extrn_lbcs.local

@@ -0,0 +1,6 @@
+#%Module
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/make_grid.local

@@ -0,0 +1,12 @@
+#%Module
+
+module use /contrib/spack-stack/apps/srw-app-test/modulefiles/Core
+module load stack-intel
+module load stack-intel-oneapi-mpi
+module load netcdf-c
+module load netcdf-fortran
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/make_ics.local

@@ -0,0 +1,14 @@
+#%Module
+
+module use /contrib/spack-stack/apps/srw-app-test/modulefiles/Core
+module load stack-intel
+module load stack-intel-oneapi-mpi
+module load netcdf-c
+module load netcdf-fortran
+module load libpng
+module load jasper
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/make_lbcs.local

@@ -0,0 +1,14 @@
+#%Module
+
+module use /contrib/spack-stack/apps/srw-app-test/modulefiles/Core
+module load stack-intel
+module load stack-intel-oneapi-mpi
+module load netcdf-c
+module load netcdf-fortran
+module load libpng
+module load jasper
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/make_orog.local

@@ -0,0 +1,12 @@
+#%Module
+
+module use /contrib/spack-stack/apps/srw-app-test/modulefiles/Core
+module load stack-intel
+module load stack-intel-oneapi-mpi
+module load netcdf-c
+module load netcdf-fortran
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/make_sfc_climo.local

@@ -0,0 +1,12 @@
+#%Module
+
+module use /contrib/spack-stack/apps/srw-app-test/modulefiles/Core
+module load stack-intel
+module load stack-intel-oneapi-mpi
+module load netcdf-c
+module load netcdf-fortran
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/miniconda_regional_workflow

@@ -0,0 +1,5 @@
+#%Module
+module use -a /contrib/GST/miniconda3/modulefiles
+module load miniconda3/4.10.3
+
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/run_fcst.local

@@ -0,0 +1,14 @@
+#%Module
+
+module use /contrib/spack-stack/apps/srw-app-test/modulefiles/Core
+module load stack-intel
+module load stack-intel-oneapi-mpi
+module load netcdf-c
+module load netcdf-fortran
+module load libpng
+module load jasper
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

modulefiles/tasks/noaacloud/run_post.local

@@ -0,0 +1,14 @@
+#%Module
+
+module use /contrib/spack-stack/apps/srw-app-test/modulefiles/Core
+module load stack-intel
+module load stack-intel-oneapi-mpi
+module load netcdf-c
+module load netcdf-fortran
+module load libpng
+module load jasper
+
+module load miniconda_regional_workflow
+module load rocoto
+prepend-path PATH /contrib/GST/miniconda/envs/regional_workflow/bin
+setenv SRW_ENV regional_workflow

scripts/exregional_make_ics.sh

@@ -145,7 +145,8 @@ case "${CCPP_PHYS_SUITE}" in
   "FV3_RRFS_v1alpha" | \
   "FV3_RRFS_v1beta" | \
   "FV3_GFS_v15_thompson_mynn_lam3km" | \
-  "FV3_HRRR" )
+  "FV3_HRRR" | \
+  "FV3_WoFS_v0" )
     if [ "${EXTRN_MDL_NAME_ICS}" = "RAP" ] || \
        [ "${EXTRN_MDL_NAME_ICS}" = "HRRR" ]; then
       varmap_file="GSDphys_var_map.txt"
@@ -177,7 +178,7 @@ esac
 # needed to generate the ICs.
 #
 # fn_atm:
-# Name (not including path) of the nemsio or netcdf file generated by the 
+# Name (not including path) of the nemsio or netcdf file generated by the
 # external model that contains the atmospheric fields.  Currently used for
 # GSMGFS and FV3GFS external model data.
 #
@@ -299,12 +300,12 @@ convert_nst=""
 # (LSM) -- which currently includes all valid external models except the
 # HRRR and the RAP -- then we set the number of soil levels to include
 # in the output NetCDF file that chgres_cube generates (nsoill_out; this
-# is a variable in the namelist that chgres_cube reads in) to 4.  This 
+# is a variable in the namelist that chgres_cube reads in) to 4.  This
 # is because FV3 can handle this regardless of the LSM that it is using
-# (which is specified in the suite definition file, or SDF), as follows.  
-# If the SDF does not use the RUC LSM (i.e. it uses the Noah or Noah MP 
-# LSM), then it will expect to see 4 soil layers; and if the SDF uses 
-# the RUC LSM, then the RUC LSM itself has the capability to regrid from 
+# (which is specified in the suite definition file, or SDF), as follows.
+# If the SDF does not use the RUC LSM (i.e. it uses the Noah or Noah MP
+# LSM), then it will expect to see 4 soil layers; and if the SDF uses
+# the RUC LSM, then the RUC LSM itself has the capability to regrid from
 # 4 soil layers to the 9 layers that it uses.
 #
 # On the other hand, if the external model is one that uses the RUC LSM
@@ -318,7 +319,7 @@ convert_nst=""
 # output from chgres_cube must contain 4 soil levels because that is what
 # these LSMs expect, and the code in FV3 does not have the capability to
 # regrid from the 9 levels in the external model to the 4 levels expected
-# by Noah/Noah MP.  In this case, chgres_cube does the regridding from 
+# by Noah/Noah MP.  In this case, chgres_cube does the regridding from
 # 9 to 4 levels.
 #
 # In summary, we can set nsoill_out to 4 unless the external model is
@@ -336,11 +337,11 @@ fi
 #-----------------------------------------------------------------------
 #
 # If the external model for ICs is one that does not provide the aerosol
-# fields needed by Thompson microphysics (currently only the HRRR and 
-# RAP provide aerosol data) and if the physics suite uses Thompson 
-# microphysics, set the variable thomp_mp_climo_file in the chgres_cube 
-# namelist to the full path of the file containing aerosol climatology 
-# data.  In this case, this file will be used to generate approximate 
+# fields needed by Thompson microphysics (currently only the HRRR and
+# RAP provide aerosol data) and if the physics suite uses Thompson
+# microphysics, set the variable thomp_mp_climo_file in the chgres_cube
+# namelist to the full path of the file containing aerosol climatology
+# data.  In this case, this file will be used to generate approximate
 # aerosol fields in the ICs that Thompson MP can use.  Otherwise, set
 # thomp_mp_climo_file to a null string.
 #

scripts/exregional_make_lbcs.sh

@@ -142,6 +142,7 @@ case "${CCPP_PHYS_SUITE}" in
 #
   "FV3_RRFS_v1alpha" | \
   "FV3_RRFS_v1beta" | \
+  "FV3_WoFS_v0" | \
   "FV3_GFS_v15_thompson_mynn_lam3km" | \
   "FV3_HRRR" )
     if [ "${EXTRN_MDL_NAME_LBCS}" = "RAP" ] || \
@@ -175,7 +176,7 @@ esac
 # needed to generate the LBCs.
 #
 # fn_atm:
-# Name (not including path) of the nemsio or netcdf file generated by the 
+# Name (not including path) of the nemsio or netcdf file generated by the
 # external model that contains the atmospheric fields.  Currently used for
 # GSMGFS and FV3GFS external model data.
 #