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Add Gaea as a supported platform for the regional_workflow #734
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ba14b40
Updates to port regional workflow to gaea
mark-a-potts e405395
Temp change with -v as batch option
mark-a-potts 27dc7df
new fixes for gaea/slurm
mark-a-potts c691fc2
Updated time for make lbcs
mark-a-potts bcc437f
added TEST data directory path
mark-a-potts 197bb1b
Update gaea.sh
mark-a-potts 128d1f1
fixes for PR
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| #%Module | ||
| module use /lustre/f2/pdata/esrl/gsd/contrib/modulefiles | ||
| module load rocoto | ||
| module load miniconda3 | ||
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| setenv SRW_ENV regional_workflow |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| #%Module | ||
| module use /lustre/f2/pdata/esrl/gsd/contrib/modulefiles | ||
| module load rocoto | ||
| module load miniconda3 | ||
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| setenv SRW_ENV regional_workflow |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| #%Module | ||
| module use /lustre/f2/pdata/esrl/gsd/contrib/modulefiles | ||
| module load rocoto | ||
| module load miniconda3 | ||
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| setenv SRW_ENV regional_workflow |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| #%Module | ||
| module use /lustre/f2/pdata/esrl/gsd/contrib/modulefiles | ||
| module load rocoto | ||
| module load miniconda3 | ||
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| setenv SRW_ENV regional_workflow |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| #%Module | ||
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| module use -a /contrib/anaconda/modulefiles | ||
| module load intel/18.0.5.274 | ||
| module load anaconda/latest | ||
| module use -a /contrib/met/modulefiles/ | ||
| module load met/10.0.0 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,70 @@ | ||
| #!/bin/bash | ||
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| function file_location() { | ||
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| # Return the default location of external model files on disk | ||
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| local external_file_fmt external_model location | ||
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| external_model=${1} | ||
| external_file_fmt=${2} | ||
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| case ${external_model} in | ||
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| "FV3GFS") | ||
| location='/lustre/f2/dev/Mark.Potts/EPIC/SRW/model_data/FV3GFS/${yyyymmdd}${hh}' | ||
| ;; | ||
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| esac | ||
| echo ${location:-} | ||
| } | ||
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| EXTRN_MDL_SYSBASEDIR_ICS=${EXTRN_MDL_SYSBASEDIR_ICS:-$(file_location \ | ||
| ${EXTRN_MDL_NAME_ICS} \ | ||
| ${FV3GFS_FILE_FMT_ICS})} | ||
| EXTRN_MDL_SYSBASEDIR_LBCS=${EXTRN_MDL_SYSBASEDIR_LBCS:-$(file_location \ | ||
| ${EXTRN_MDL_NAME_LBCS} \ | ||
| ${FV3GFS_FILE_FMT_ICS})} | ||
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| # System scripts to source to initialize various commands within workflow | ||
| # scripts (e.g. "module"). | ||
| if [ -z ${ENV_INIT_SCRIPTS_FPS:-""} ]; then | ||
| ENV_INIT_SCRIPTS_FPS=( "/etc/profile" ) | ||
| fi | ||
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| # Commands to run at the start of each workflow task. | ||
| PRE_TASK_CMDS='{ ulimit -s unlimited; ulimit -a; }' | ||
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| # Architecture information | ||
| WORKFLOW_MANAGER="rocoto" | ||
| SLURM_NATIVE_CMD="-M c3" | ||
| NCORES_PER_NODE=${NCORES_PER_NODE:-32} | ||
| SCHED=${SCHED:-"slurm"} | ||
| QUEUE_DEFAULT=${QUEUE_DEFAULT:-"normal"} | ||
| QUEUE_HPSS=${QUEUE_DEFAULT:-"normal"} | ||
| QUEUE_FCST=${QUEUE_DEFAULT:-"normal"} | ||
| WTIME_MAKE_LBCS="00:60:00" | ||
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| # UFS SRW App specific paths | ||
| FIXgsm=${FIXgsm:-"//lustre/f2/dev/Mark.Potts/EPIC/fix/fix_am"} | ||
| FIXaer=${FIXaer:-"/lustre/f2/dev/Mark.Potts/EPIC/fix/fix_aer"} | ||
| FIXlut=${FIXlut:-"/lustre/f2/dev/Mark.Potts/EPIC/fix/fix_lut"} | ||
| TOPO_DIR=${TOPO_DIR:-"/lustre/f2/dev/Mark.Potts/EPIC/fix/fix_orog"} | ||
| SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/lustre/f2/dev/Mark.Potts/EPIC/fix/fix_sfc_climo"} | ||
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| RUN_CMD_SERIAL="time" | ||
| #Run Commands currently differ for GNU/openmpi | ||
| #RUN_CMD_UTILS='mpirun --mca btl tcp,vader,self -np $nprocs' | ||
| #RUN_CMD_FCST='mpirun --mca btl tcp,vader,self -np ${PE_MEMBER01}' | ||
| #RUN_CMD_POST='mpirun --mca btl tcp,vader,self -np $nprocs' | ||
| RUN_CMD_UTILS='srun --mpi=pmi2 -n $nprocs' | ||
| RUN_CMD_FCST='srun --mpi=pmi2 -n ${PE_MEMBER01}' | ||
| RUN_CMD_POST='srun --mpi=pmi2 -n $nprocs' | ||
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| # MET Installation Locations | ||
| # MET Plus is not yet supported on gaea | ||
| # Test Data Locations | ||
| TEST_EXTRN_MDL_SOURCE_BASEDIR="/lustre/f2/dev/Mark.Potts/EPIC/SRW/model_data" | ||
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