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Merged
JeffBeck-NOAA merged 9 commits into from
Aug 22, 2020
Merged

add and test FV3_RRFS_v1beta #270

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a2c6926
RRFS_v1beta test finished
siwei-noaa Aug 17, 2020
d19300d
Merge branch 'feature/rrfs_v1beta_test' into tested
siwei-noaa Aug 17, 2020
26b866c
remove config.sh
siwei-noaa Aug 18, 2020
8f09ac1
revoke change on DT_ATMOS
siwei-noaa Aug 18, 2020
feb09a1
add if condition for RRFS_v1beta
siwei-noaa Aug 21, 2020
4b668a4
Merge branch 'develop' of https://github.com/NOAA-EMC/regional_workfl…
siwei-noaa Aug 21, 2020
9194eba
Merge branch 'develop' into feature/rrfs_v1beta_test
siwei-noaa Aug 21, 2020
9eb7f59
bug fix for atmos_nthreads
siwei-noaa Aug 21, 2020
081dc3c
FIXsar to FIXLAM
siwei-noaa Aug 22, 2020
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5 changes: 4 additions & 1 deletion scripts/exregional_make_ics.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -107,7 +107,7 @@ case "${CCPP_PHYS_SUITE}" in
"FV3_GFS_2017_gfdlmp" | "FV3_GFS_2017_gfdlmp_regional" )
phys_suite="GFS"
;;
"FV3_GSD_v0" | "FV3_GSD_SAR" | "FV3_GSD_SAR_v1" |"FV3_RRFS_v0" )
"FV3_GSD_v0" | "FV3_GSD_SAR" | "FV3_GSD_SAR_v1" |"FV3_RRFS_v0" |"FV3_RRFS_v1beta")
phys_suite="GSD"
;;
"FV3_CPT_v0")
Expand Down Expand Up @@ -307,6 +307,7 @@ case "${EXTRN_MDL_NAME_ICS}" in
elif [ "${CCPP_PHYS_SUITE}" = "FV3_GSD_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR_v1" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR" ]; then
# For GSD physics, add three additional tracers (the ice, rain and water
# number concentrations) that are required for Thompson microphysics.
Expand Down Expand Up @@ -363,6 +364,7 @@ HRRRX grib2 files created after about \"${cdate_min_HRRRX}\"..."
if [ "${CCPP_PHYS_SUITE}" = "FV3_GFS_2017_gfdlmp" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR_v1" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_CPT_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GFS_v15p2" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GFS_v16beta" ]; then
Expand Down Expand Up @@ -403,6 +405,7 @@ HRRRX grib2 files created after about \"${cdate_min_HRRRX}\"..."
[ "${CCPP_PHYS_SUITE}" = "FV3_CPT_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR_v1" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GFS_v15p2" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GFS_v16beta" ]; then
numsoil_out="4"
Expand Down
4 changes: 3 additions & 1 deletion scripts/exregional_make_lbcs.sh
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Expand Up @@ -107,7 +107,7 @@ case "${CCPP_PHYS_SUITE}" in
"FV3_GFS_2017_gfdlmp" | "FV3_GFS_2017_gfdlmp_regional")
phys_suite="GFS"
;;
"FV3_GSD_v0" | "FV3_GSD_SAR" | "FV3_GSD_SAR_v1" | "FV3_RRFS_v0" )
"FV3_GSD_v0" | "FV3_GSD_SAR" | "FV3_GSD_SAR_v1" | "FV3_RRFS_v0" | "FV3_RRFS_v1beta" )
phys_suite="GSD"
;;
"FV3_CPT_v0" )
Expand Down Expand Up @@ -290,6 +290,7 @@ case "${EXTRN_MDL_NAME_LBCS}" in
elif [ "${CCPP_PHYS_SUITE}" = "FV3_GSD_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR_v1" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR" ]; then
# For GSD physics, add three additional tracers (the ice, rain and water
# number concentrations) that are required for Thompson microphysics.
Expand Down Expand Up @@ -332,6 +333,7 @@ case "${EXTRN_MDL_NAME_LBCS}" in
[ "${CCPP_PHYS_SUITE}" = "FV3_CPT_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR_v1" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GFS_v15p2" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GFS_v16beta" ]; then
numsoil_out="4"
Expand Down
3 changes: 3 additions & 0 deletions scripts/exregional_make_orog.sh
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Expand Up @@ -342,6 +342,9 @@ raw_orog_fn="${raw_orog_fn_prefix}.${fn_suffix_with_halo}"
raw_orog_fp="${raw_dir}/${raw_orog_fn}"
mv_vrfy "${raw_orog_fp_orig}" "${raw_orog_fp}"

# copy two files for drag_suite to the orog directory (temporary)

@mkavulich mkavulich Aug 18, 2020

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If they are necessary for running the case, these files should be added to the standard static/fix files on each official platform. We should not point to personal directories that could change unexpectedly.

@siwei-noaa siwei-noaa Aug 18, 2020

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Thank you. We are waiting on Mike's script to replace those files, and will update this when it is ready.

cp_vrfy /scratch2/BMC/gsd-fv3-test/she/orog/* ${OROG_DIR} # temporary code

print_info_msg "$VERBOSE" "
Orography file generation complete."
#
Expand Down
21 changes: 21 additions & 0 deletions scripts/exregional_run_fcst.sh
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Expand Up @@ -252,6 +252,26 @@ Cannot create symlink because target does not exist:
target = \"$target\""
fi

# two files for drag_suite scheme
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# Symlink to orographic statistics fields file with "${CRES}_" and "halo0" stripped from name.
target="${FIXsar}/${CRES}${DOT_OR_USCORE}oro_data_ls.tile${TILE_RGNL}.halo${NH0}.nc"
symlink="oro_data_ls.nc"
if [ -f "${target}" ]; then
ln_vrfy -sf ${relative_or_null} $target $symlink
else
print_err_msg_exit "\
Cannot create symlink because target does not exist:
target = \"$target}\""
fi
target="${FIXsar}/${CRES}${DOT_OR_USCORE}oro_data_ss.tile${TILE_RGNL}.halo${NH0}.nc"
symlink="oro_data_ss.nc"
if [ -f "${target}" ]; then
ln_vrfy -sf ${relative_or_null} $target $symlink
else
print_err_msg_exit "\
Cannot create symlink because target does not exist:
target = \"$target}\""
fi
#
# Symlink to halo-4 orography file with "${CRES}_" stripped from name.
#
Expand Down Expand Up @@ -415,6 +435,7 @@ if [ "${USE_CCPP}" = "TRUE" ]; then
if [ "${CCPP_PHYS_SUITE}" = "FV3_GSD_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR_v1" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR" ]; then
ln_vrfy -sf ${relative_or_null} $EXPTDIR/CCN_ACTIVATE.BIN ${run_dir}
fi
Expand Down
1 change: 1 addition & 0 deletions ush/generate_FV3SAR_wflow.sh
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Expand Up @@ -459,6 +459,7 @@ the forecast model directory sturcture to the experiment directory..."
if [ "${CCPP_PHYS_SUITE}" = "FV3_GSD_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR_v1" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v0" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ] || \
[ "${CCPP_PHYS_SUITE}" = "FV3_GSD_SAR" ]; then
print_info_msg "$VERBOSE" "
Copying the fixed file containing cloud condensation nuclei (CCN) data
Expand Down
2 changes: 2 additions & 0 deletions ush/link_fix.sh
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Expand Up @@ -244,6 +244,8 @@ Creating links in the FIXsar directory to the grid files..."
fns=( \
"C*${DOT_OR_USCORE}oro_data.tile${TILE_RGNL}.halo${NH0}.nc" \

@JeffBeck-NOAA JeffBeck-NOAA Aug 21, 2020 •
edited
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@siwei-noaa Same comment as above for these lines. An "if [ "${CCPP_PHYS_SUITE}" = "FV3_RRFS_v1beta" ]" statement should be added for the oro_data_??.tile* files in this block. After the initial "if" statement, an "else" clause would have the original oro_data.tile* files, so that those would be defined for anything other than FV3_RRFS_v1beta.

@siwei-noaa siwei-noaa Aug 21, 2020

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In testing, will commit if it works.

"C*${DOT_OR_USCORE}oro_data.tile${TILE_RGNL}.halo${NH4}.nc" \
"C*${DOT_OR_USCORE}oro_data_ss.tile${TILE_RGNL}.halo${NH0}.nc" \
"C*${DOT_OR_USCORE}oro_data_ls.tile${TILE_RGNL}.halo${NH0}.nc" \
)
fps=( "${fns[@]/#/${OROG_DIR}/}" )
run_task="${RUN_TASK_MAKE_OROG}"
Expand Down
13 changes: 13 additions & 0 deletions ush/templates/FV3.input.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,18 @@ FV3_RRFS_v0:
lsm: 2
lsoil_lsm: 4

FV3_RRFS_v1beta:
gfs_physics_nml:
<<: *gsd_sar_phys
lsm: 2
lsoil_lsm: 4
imfshalcnv: -1
IMFDEEPCNV: -1
DO_MYNNSFCLAY: true
GWD_OPT: 3
atmos_model_nml:
fdiag: 3

FV3_GFS_2017_gfdlmp:
atmos_model_nml:
avg_max_length: 3600.0
Expand Down Expand Up @@ -439,3 +451,4 @@ FV3_CPT_v0:
xkzm_s: 1.0
nam_sfcperts: !!python/none
surf_map_nml: !!python/none

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