nan detection and intervention (Lightning-AI#1097)

* check for nan values * test nan detection on loss * sys.exit * whitespace * detect nan and inf values in loss and params * update * added documentation * moved detect nan to training loop, remove flag for print * blank line * test * rename * deprecate print_nan_grads * deprecated print_nan_grads * remove unused imports * update changelog * fix line too long * correct deprecated version Co-Authored-By: Jirka Borovec <[email protected]> * raise exception instead of sysexit Co-Authored-By: Jirka Borovec <[email protected]> * raise exception instead of sysexit Co-Authored-By: Jirka Borovec <[email protected]> * Update pytorch_lightning/trainer/training_tricks.py Co-Authored-By: Jirka Borovec <[email protected]> * Update pytorch_lightning/trainer/training_tricks.py Co-Authored-By: Jirka Borovec <[email protected]> * fix test Co-authored-by: Jirka Borovec <[email protected]>
tullie · Apr 3, 2020 · d9b5962 · d9b5962
1 parent ac588c2
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -13,15 +13,15 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 - Added type hints to `pytorch_lightning.core` ([#946](https://github.com/PyTorchLightning/pytorch-lightning/pull/946))
 - Added support for IterableDataset in validation and testing ([#1104](https://github.com/PyTorchLightning/pytorch-lightning/pull/1104))
 - Added support for non-primitive types in hparams for TensorboardLogger ([#1130](https://github.com/PyTorchLightning/pytorch-lightning/pull/1130))
-
+- Added a check that stops the training when loss or weights contain NaN or inf values. ([#1097](https://github.com/PyTorchLightning/pytorch-lightning/pull/1097))
 
 ### Changed
 
 -
 
 ### Deprecated
 
--
+- Deprecated Trainer argument `print_nan_grads` ([#1097](https://github.com/PyTorchLightning/pytorch-lightning/pull/1097))
 
 ### Removed
 

diff --git a/pytorch_lightning/trainer/trainer.py b/pytorch_lightning/trainer/trainer.py
@@ -109,7 +109,7 @@ def __init__(
             distributed_backend: Optional[str] = None,
             use_amp=False,  # backward compatible, todo: remove in v0.9.0
             precision: int = 32,
-            print_nan_grads: bool = False,
+            print_nan_grads: bool = False,  # backward compatible, todo: remove in v0.9.0
             weights_summary: str = 'full',
             weights_save_path: Optional[str] = None,
             amp_level: str = 'O1',
@@ -208,7 +208,10 @@ def __init__(
 
             precision: Full precision (32), half precision (16).
 
-            print_nan_grads: Prints gradients with nan values
+            print_nan_grads:
+                .. warning:: .. deprecated:: 0.7.2
+                    Has no effect. When detected, NaN grads will be printed automatically.
+                    Will remove 0.9.0.
 
             weights_summary: Prints a summary of the weights when training begins.
 
@@ -296,7 +299,13 @@ def __init__(
                           "`num_sanity_val_steps` since v0.5.0"
                           " and this method will be removed in v0.8.0", DeprecationWarning)
             self.nb_sanity_val_steps = nb_sanity_val_steps
-        self.print_nan_grads = print_nan_grads
+
+        # Backward compatibility, TODO: remove in v0.9.0
+        if print_nan_grads:
+            warnings.warn("Argument `print_nan_grads` has no effect and will be removed in v0.9.0."
+                          " NaN grads will be printed automatically when detected.",
+                          DeprecationWarning)
+
         self.truncated_bptt_steps = truncated_bptt_steps
         self.resume_from_checkpoint = resume_from_checkpoint
         self.shown_warnings = set()

diff --git a/pytorch_lightning/trainer/training_loop.py b/pytorch_lightning/trainer/training_loop.py
@@ -119,6 +119,17 @@ def training_step(self, batch, batch_idx):
     trainer = Trainer(truncated_bptt_steps=2)
 
 
+NaN detection and intervention
+------------------------------
+In every forward pass in training, Lightning will check that
+
+1. the loss you return in `training_step` is finite (not NaN and not +/-inf)
+2. the model parameters have finite values.
+
+Lightning will terminate the training loop with an error message if NaN or infinite
+values are detected. If this happens, you should investigate numerically unstable operations
+in your model.
+
 """
 
 import copy
@@ -187,7 +198,6 @@ class TrainerTrainLoopMixin(ABC):
     optimizers: ...
     accumulate_grad_batches: int
     use_amp: bool
-    print_nan_grads: ...
     track_grad_norm: ...
     model: LightningModule
     running_loss: ...
@@ -200,7 +210,7 @@ class TrainerTrainLoopMixin(ABC):
     reload_dataloaders_every_epoch: bool
     progress_bar_refresh_rate: ...
     max_steps: int
-    max_steps: int
+    min_steps: int
     total_batch_idx: int
     checkpoint_callback: ...
 
@@ -239,7 +249,7 @@ def clip_gradients(self):
         """Warning: this is just empty shell for code implemented in other class."""
 
     @abstractmethod
-    def print_nan_gradients(self):
+    def detect_nan_tensors(self, *args):
         """Warning: this is just empty shell for code implemented in other class."""
 
     @abstractmethod
@@ -556,9 +566,8 @@ def optimizer_closure():
                 # calculate loss
                 loss = optimizer_closure()
 
-                # nan grads
-                if self.print_nan_grads:
-                    self.print_nan_gradients()
+                # check if loss or model weights are nan
+                self.detect_nan_tensors(loss)
 
                 # track total loss for logging (avoid mem leaks)
                 self.batch_loss_value += loss.item()

diff --git a/pytorch_lightning/trainer/training_tricks.py b/pytorch_lightning/trainer/training_tricks.py
@@ -1,7 +1,9 @@
 import math
+import sys
 from abc import ABC, abstractmethod
 
 import torch
+from torch import Tensor
 
 from pytorch_lightning import _logger as log
 from pytorch_lightning.callbacks import GradientAccumulationScheduler
@@ -15,6 +17,7 @@ class TrainerTrainingTricksMixin(ABC):
     # this is just a summary on variables used in this abstract class,
     #  the proper values/initialisation should be done in child class
     gradient_clip_val: ...
+    precision: ...
 
     @abstractmethod
     def get_model(self):
@@ -45,12 +48,29 @@ def clip_gradients(self):
             for p in parameters:
                 p.grad.data.mul_(torch.where(clip_coef < 1, clip_coef, torch.tensor(1., device=device)))
 
-    def print_nan_gradients(self):
+    def print_nan_gradients(self) -> None:
         model = self.get_model()
         for param in model.parameters():
             if (param.grad is not None) and torch.isnan(param.grad.float()).any():
                 log.info(param, param.grad)
 
+    def detect_nan_tensors(self, loss: Tensor) -> None:
+        model = self.get_model()
+
+        # check if loss is nan
+        if not torch.isfinite(loss).all():
+            raise ValueError(
+                'The loss returned in `training_step` is nan or inf.'
+            )
+        # check if a network weight is nan
+        for name, param in model.named_parameters():
+            if not torch.isfinite(param).all():
+                self.print_nan_gradients()
+                raise ValueError(
+                    f'Detected nan and/or inf values in `{name}`.'
+                    ' Check your forward pass for numerically unstable operations.'
+                )
+
     def configure_accumulated_gradients(self, accumulate_grad_batches):
         if isinstance(accumulate_grad_batches, dict):
             self.accumulation_scheduler = GradientAccumulationScheduler(accumulate_grad_batches)

diff --git a/tests/test_cpu_models.py b/tests/test_cpu_models.py
@@ -1,5 +1,7 @@
+import math
 import warnings
 
+import pytest
 import torch
 
 import tests.models.utils as tutils
@@ -26,7 +28,6 @@ def test_early_stopping_cpu_model(tmpdir):
         gradient_clip_val=1.0,
         overfit_pct=0.20,
         track_grad_norm=2,
-        print_nan_grads=True,
         show_progress_bar=True,
         logger=tutils.get_test_tube_logger(tmpdir),
         train_percent_check=0.1,
@@ -48,7 +49,6 @@ def test_lbfgs_cpu_model(tmpdir):
     trainer_options = dict(
         default_save_path=tmpdir,
         max_epochs=2,
-        print_nan_grads=True,
         show_progress_bar=False,
         weights_summary='top',
         train_percent_check=1.0,
@@ -68,7 +68,6 @@ def test_default_logger_callbacks_cpu_model(tmpdir):
         max_epochs=1,
         gradient_clip_val=1.0,
         overfit_pct=0.20,
-        print_nan_grads=True,
         show_progress_bar=False,
         train_percent_check=0.01,
         val_percent_check=0.01,
@@ -251,7 +250,6 @@ def test_all_features_cpu_model(tmpdir):
         gradient_clip_val=1.0,
         overfit_pct=0.20,
         track_grad_norm=2,
-        print_nan_grads=True,
         show_progress_bar=False,
         logger=tutils.get_test_tube_logger(tmpdir),
         accumulate_grad_batches=2,
@@ -359,5 +357,63 @@ def test_single_gpu_model(tmpdir):
     tutils.run_model_test(trainer_options, model)
 
 
+def test_nan_loss_detection(tmpdir):
+    test_step = 8
+
+    class InfLossModel(LightTrainDataloader, TestModelBase):
+
+        def training_step(self, batch, batch_idx):
+            output = super().training_step(batch, batch_idx)
+            if batch_idx == test_step:
+                if isinstance(output, dict):
+                    output['loss'] *= torch.tensor(math.inf)  # make loss infinite
+                else:
+                    output /= 0
+            return output
+
+    hparams = tutils.get_hparams()
+    model = InfLossModel(hparams)
+
+    # fit model
+    trainer = Trainer(
+        default_save_path=tmpdir,
+        max_steps=(test_step + 1),
+    )
+
+    with pytest.raises(ValueError, match=r'.*The loss returned in `training_step` is nan or inf.*'):
+        trainer.fit(model)
+        assert trainer.global_step == test_step
+
+    for param in model.parameters():
+        assert torch.isfinite(param).all()
+
+
+def test_nan_params_detection(tmpdir):
+    test_step = 8
+
+    class NanParamModel(LightTrainDataloader, TestModelBase):
+
+        def on_after_backward(self):
+            if self.global_step == test_step:
+                # simulate parameter that became nan
+                torch.nn.init.constant_(self.c_d1.bias, math.nan)
+
+    hparams = tutils.get_hparams()
+
+    model = NanParamModel(hparams)
+    trainer = Trainer(
+        default_save_path=tmpdir,
+        max_steps=(test_step + 1),
+    )
+
+    with pytest.raises(ValueError, match=r'.*Detected nan and/or inf values in `c_d1.bias`.*'):
+        trainer.fit(model)
+        assert trainer.global_step == test_step
+
+    # after aborting the training loop, model still has nan-valued params
+    params = torch.cat([param.view(-1) for param in model.parameters()])
+    assert not torch.isfinite(params).all()
+
+
 # if __name__ == '__main__':
 #     pytest.main([__file__])