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1. scDeepCluster scDeepCluster Public

   scDeepCluster for Single Cell RNA-seq data

   Jupyter Notebook 98 36

2. scDeepCluster_pytorch scDeepCluster_pytorch Public

   Pytorch implementation of scDeepCluster for Single Cell RNA-seq data

   Jupyter Notebook 30 5

3. scDCC scDCC Public

   scDCC: Single Cell Deep Constrained Clustering

   Python 41 5

4. scDHMap scDHMap Public

   Model-based deep hyperbolic manifold learning for visualizing complex hierarchical structures in single-cell genomics data

   Jupyter Notebook 7 2

5. EBtimecourse EBtimecourse Public

   An empirical Bayes change point model for gene expression timecourse data.

   Jupyter Notebook 1 1

6. spaVAE spaVAE Public

   Dependency-aware deep generative models for multitasking analysis of spatial genomics data

   Jupyter Notebook 30 2