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virulence-factor

Here are 6 public repositories matching this topic...

fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Updated Nov 14, 2024
Nextflow

beiko-lab / arete

AMR/VF LGT focused bacterial genomics analysis workflow

pipeline nextflow reproducible-research metagenomics virulence-factor recombination pangenomics rgi antimicrobial-resistance lateral-gene-transfer mobile-genetic-elements bacterial-genome-analysis antimicrobial-genes-annotation genomic-islands-prediction poppunk

Updated Aug 8, 2024
Python

lmc297 / BTyper3

In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data

taxonomy mlst virulence-factor average-nucleotide-identity multi-locus-sequence-typing bacillus bacillus-cereus

Updated May 8, 2024
Python

aleimba / ecoli_VF_collection

Collection of 1069 Escherichia coli virulence factors

science opensource bioinformatics database annotation genomics computational-biology microbial-genomics microbiology ecoli virulence pathogenicity virulence-factor

Updated Nov 20, 2016

nicolagulmini / virulent_factor_classification

Model that computes the probability of a protein to be a virulence factor.

neural-network virulence-factor nerve reverse-vaccinology

Updated Feb 11, 2024
Jupyter Notebook

Strong-Lab / Prophage_in_NTM

This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

virulence-factor ntm mycobacterium prophage prophages integrated-prophages

Updated Dec 16, 2020
Jupyter Notebook

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