Technology-invariant pipeline for spatial omics analysis (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / ...) that scales to millions of cells
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Updated
Sep 27, 2024 - Python
Technology-invariant pipeline for spatial omics analysis (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / ...) that scales to millions of cells
Interactive visualization of spatial omics data
End-to-end analysis of spatial multi-omics data
Spatial analysis toolkit for single cell multiplexed tissue data
conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
Interoperability between SpatialData and the Xenium Explorer
OMERO.web plugin for the Vitessce multimodal data viewer.
Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.
Perform RESTORE normalization on multiplexed imaging data.
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