Repository for version control of the BrAPI specifications

📈🌱 Mixed Models for Agriculture in R

Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment trials" (Fernandes et. al 2024)

We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals

Modeling of nutritional traits from multiple crops using NIRS and machine learning/statistics

Using near-infrared spectroscopy (NIRS) and machine learning to determine oleic acid content from peanut raw grains

Diallel analysis of carrot phenotypes

📉🌱 R für Bio- und Agrarwissenschaftler

Tools and Statistical Procedures in Plant Science

Analysis of Selection Index in Plant Breeding

List of papers related to Agricultural Statistics, Plant Breeding, and Quantitative Genetics

A Practical Haplotype Graph (PHG) for apple (Malus domestica)

Gradient Boosting Regression (GBR, https://github.com/scikit-learn/scikit-learn) model for genomic predictions

Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,

A Breeding Api (BrAPI) implementation written in Java. Contains all data objects, client and server interfaces for all modules.

This repository serves to document, share, and collaborate on scripts used in the University of Arkansas fruit breeding lab.

PopAllele encodes and decode the genetic distribution of alleles within populations

BrAPI proxy solution

Data repository for the paper of the same name.