Python ETL framework for stream processing, real-time analytics, LLM pipelines, and RAG.
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Updated
Jul 7, 2024 - Python
Python ETL framework for stream processing, real-time analytics, LLM pipelines, and RAG.
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
Benchmarks for data processing systems: Pathway, Spark, Flink, Kafka Streams
A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
Overrepresentation analysis for KEGG and PID pathways using community detection
PKB (Pathway-based Kernel Boosting): use gene expression for classification
PKB: use clinical features and gene expression to predict outcomes of interest. Support classification, regression, and survival analysis
HuberMind AI is an innovative tool inspired by the expertise of neuroscientist Andrew Huberman. Just 'Ask Andrew' anything you want to know, and get intelligent, AI-powered responses.
DEPRECATED: Integrating topologically associating domains (TADs) to prioritize GWAS signal
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
Pathway vs Spark for Streaming Analytics
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