This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution.

Farr, M.T., Green, D.S., Holekamp, K.E., Roloff, G.J., & Zipkin, E.F. 2019. Multi-species hierarchical modeling reveals variable responses of African carnivores to management alternatives. Ecological Applications 9(2): e01845.

Multispecies occupancy models to investigate seasonal co-occurrence of predator-prey pairs and changes withing these co-occurrences.

Davis, K. L., Silverman, E. D., Sussman, A. L., Wilson, R. R., Zipkin, E. F. (2022). Errors in aerial survey count data: Identifying pitfalls and solutions. Ecology and Evolution 12:e8733.

Farr, M.T., Green, D.S., Holekamp, K.E., Roloff, G.J., & Zipkin, E.F. 2019. Multi-species hierarchical modeling reveals variable responses of African carnivores to management alternatives. Ecological Applications 9(2): e01845.

Analysis of seasonal habitat-use patterns of Aldabra giant tortoises of Aldabra Atoll, Seychelles using temporary emigration models.

DiRenzo, G. V., E. Zipkin, E. C. Grant, J. A. Royle, A. V. Longo, K. Z. Zamudio, and K. R. Lips. 2018. Eco-evolutionary rescue promotes host-pathogen coexistence. Ecological Applications 28: 1948-1962.

Machine learning based species occupancy-detection model for prediction problem

Single-species, dynamic occupancy models to investigate seasonal habitat-use patterns

Contains data and code for Brusa et al. 2024. Correcting for measurement errors in a long-term aerial survey with auxiliary photographic data. Ecosphere DOI: 10.1002/ecs2.4961.