ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

Plugins for bone image analysis

Image processing software for textbooks by W. Burger & M. Burge

Curve tracing ImageJ plugin

Detection of Molecules plugin for ImageJ, Utrecht University

ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

ImageJ library to detect and analyse connected components (blobs) in binary images

FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis

ImageJ plugin to read xrm files.

Error Level Analysis (ELA) in ImageJ

Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

v0.1.0, Adaptive Median fiter - imageJ plugin

ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves

EVAnalyzer 1 - EV analyzing plugin for Fiji

This plugin segments and classify diffusion trajectories

Digital Holographic Microscopy plugin for ImageJ. Allows realistic simulation and real-time reconstruction of single-shot holograms.

ImageJ Plugin Library for 2D reconstruction (back-projection and filtered bp)