Kmer Analysis of Pileups for Genotyping
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Updated
Jul 16, 2024 - Rust
Kmer Analysis of Pileups for Genotyping
Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow
Implementation of WGS genotyping pipeline for EFIGA FBS FAMILY dataset
Variant calling using a pan-genomic reference, version 3
HBVouroboros automates sequencing-based HBV genotyping and expression profiling
Efficient genotyping bi-allelic SNPs on single cells
Training material for the use of Germinate
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
Data repository for the paper of the same name.
Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.
An in silico tool to predict Shigella serotypes
genotype prepare for sequencing paltform.
A macOS application for microsatellite genotyping using capillary sequencing data.
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
Methylation and mqtl analysis of the developing knee
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Repository for workshop study projects in Bioinformatics Institute 2023-2024
This project was written as a first step to apply the ddRADSeq genotyping method to prokaryota. This code is made to dertemine, in silico, the couple of enzymes to apply on a given sequence.
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