Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
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Updated
May 23, 2024 - C++
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
💾 📃 "Reads to report" for public health and clinical microbiology
De novo assembly based variant calling pipeline for Illumina short reads
🌺 reference-free transcriptome assembly for short and long reads
A WGS de novo assembler based on the FMD-index for large genomes
Standalone C library for assembling Illumina short reads in small regions
Learning to untangle genome assembly with graph neural networks.
Simple bacterial assembly and annotation pipeline
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
A simple DSL2 workflow: tutorial
Basic workflow for nanopore sequencing data
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Germline DNM caller based on LdBG assembly of pathogens
Iterative Organellar Genome Assembly
De novo assembly pipeline for 10X linked-reads using Supernova
Calling SNPs using UNEAK (de novo) pipeline for ponderosa pine
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