Upgrade to htsjdk 2.18.2 and remove htsjdk classes from Disq that wer…

…e added in samtools/htsjdk#1138
tomwhite · Jan 17, 2019 · c5454d2 · c5454d2
1 parent ad0984b
commit c5454d2
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diff --git a/pom.xml b/pom.xml
@@ -32,7 +32,7 @@
     <properties>
         <maven.compiler.target>1.8</maven.compiler.target>
         <maven.compiler.source>1.8</maven.compiler.source>
-        <htsjdk.version>2.16.1</htsjdk.version>
+        <htsjdk.version>2.18.2</htsjdk.version>
         <hadoop.version>2.7.5</hadoop.version>
         <mockito.version>2.22.0</mockito.version>
         <kryo-serializers.version>0.42</kryo-serializers.version>

diff --git a/src/htsjdk/java/htsjdk/samtools/BAMSBIIndexer.java b/src/htsjdk/java/htsjdk/samtools/BAMSBIIndexer.java