The changes to CRAM have introduced an incompatible change to CRAIEnt…

…ry that

affects CramSource in Disq. See the note about incompatible CRAM changes
at https://github.com/samtools/htsjdk/releases/tag/2.17.0.

This commit uses the new CRAIEntry API introduced in samtools/htsjdk#1256

src/main/java/org/disq_bio/disq/impl/formats/cram/CramSource.java

@@ -153,7 +153,7 @@ private NavigableSet<Long> getContainerOffsetsFromIndex(
       NavigableSet<Long> containerOffsets = new TreeSet<>();
       CRAIIndex index = CRAMCRAIIndexer.readIndex(in);
       for (CRAIEntry entry : index.getCRAIEntries()) {
-        containerOffsets.add(entry.containerStartOffset);
+        containerOffsets.add(entry.getContainerStartByteOffset());
       }
       containerOffsets.add(cramFileLength);
       return containerOffsets;