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Citations
If you use this software for a publication, please cite the following, as appropriate
Doel, T.; Matin, T.N.; Gleeson, F.V.; Gavaghan, D.J.; Grau, V., Pulmonary lobe segmentation from CT images using fissureness, airways, vessels and multilevel B-splines. Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on , vol., no., pp.1491-1494, 2-5 May 2012. doi: https://doi.org/10.1109/ISBI.2012.6235854
Tahreema N. Matin, Najib Rahman, Annabel H. Nickol, Mitchell Chen, Xiaojun Xu, Neil J. Stewart, Tom Doel, Vicente Grau, James M. Wild, and Fergus V. Gleeson. Chronic Obstructive Pulmonary Disease: Lobar Analysis with Hyperpolarized 129Xe MR Imaging Radiology 2017 282:3, 857-868 https://doi.org/10.1148/radiol.2016152299
KS Burrowes‚ T Doel‚ M Kim‚ C Vargas‚ J Roca‚ V Grau and D Kay: A combined image-modelling approach assessing the impact of hyperinflation due to emphysema on regional ventilation–perfusion matching. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization 04/2015; DOI: https://doi.org/10.1080/21681163.2015.1023358
Burrowes KS, Doel T, Brightling C. Computational modeling of the obstructive lung diseases asthma and COPD. Journal of Translational Medicine. 2014;12(Suppl 2):S5. DOI: https://doi.org/10.1186/1479-5876-12-S2-S5.
Doel, T. Developing Clinical Measures of Lung Function in COPD Patients Using Medical Imaging and Computational Modelling. PhD thesis. University of Oxford, 2012.
Pakzad, A. et al., Quantifying morphological airway damage in idiopathic pulmonary fibrosis. European Respiratory Journal Sep 2022, 60 (suppl 66) 2547. DOI: https://doi.org/10.1183/13993003.congress-2022.2547
Veiga, C. et al. Novel CT-Based Objective Imaging Biomarkers of Long-Term Radiation-Induced Lung Damage. International Journal of Radiation Oncology* Biology* Physics 2018. 102 (4), 1287-1298. DOI: https://doi.org/10.1016/j.ijrobp.2018.06.006
Bragman, F. et al. Pulmonary Lobe Segmentation With Probabilistic Segmentation of the Fissures and a Groupwise Fissure Prior. IEEE Transactions on Medical Imaging 2017. Volume: 36, Issue 8, DOI: https://doi.org/10.1109/TMI.2017.2688377
Other algorithms used in the code
Cahill, N.D., Noble, J.A., Hawkes, D.J., Ray, L.A.: Fast fluid registration with Dirichlet boundary conditions: a transform-based approach. IEEE International Symposium on Biomedical Imaging, 712-715 (2007).
Frangi, A., Niessen, W.J., Vincken, K., Viergever, M.A.: Multiscale vessel enhancement filtering. Medical Image Computing and Computer-Assisted Intervention 1496, 130-137 (1998).
Vincent, L., Soille, P.: Watersheds in digital spaces: an efficient algorithm based on immersion simulations. IEEE Transactions on Pattern Analysis and Machine Intelligence 13(6), 583-598 (1991).
S. Lee, G. Wolberg, and S. Y. Shin. Scattered data interpolation with multilevel B-splines. IEEE Transactions on Visualization and Computer Graphics, 3(3):229--244, 1997.