Remove bzip2 requirement from kseq++

tmaklin · Jun 6, 2024 · 1d4218f · 1d4218f
1 parent 2ee82f9
commit 1d4218f
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/deploy/linux/build.sh b/deploy/linux/build.sh
@@ -29,6 +29,10 @@ git clone https://github.com/tmaklin/alignment-writer
 cd alignment-writer
 git checkout ${VER}
 
+## Remove the bzip2 dependency from kseq++
+sed 's/find_package(BZip2 REQUIRED)//g' external/kseqpp/CMakeLists.txt | sed 's/^[[:space:]]*INTERFACE[[:space:]]*$<TARGET_PROPERTY:BZip2::BZip2,INTERFACE_INCLUDE_DIRECTORIES>//g' | sed 's/^[[:space:]]*INTERFACE[[:space:]]*$<BUILD_INTERFACE:BZip2::BZip2>;$<INSTALL_INTERFACE:BZip2::BZip2>//g' > kseqpp_CMakeLists.txt.tmp
+mv kseqpp_CMakeLists.txt.tmp external/kseqpp/CMakeLists.txt
+
 ## Configure source build
 mkdir build
 cd build