Add cd #9
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| name: Build binaries | |
| on: | |
| push: | |
| tags: | |
| - "v*.*.*" | |
| branches: | |
| - alignment-writer-release-testing | |
| jobs: | |
| build_linux-x86_64: | |
| runs-on: ubuntu-latest | |
| container: phusion/holy-build-box-64:3.0.2 | |
| steps: | |
| - name: Install dependencies | |
| id: install-dependencies | |
| shell: bash | |
| run: | | |
| yum install -y git | |
| - name: Create io directories | |
| id: mkdir-io | |
| run: | | |
| mkdir /io | |
| cd /io | |
| mkdir tmp | |
| cd tmp | |
| - name: Clone source tree | |
| id: run-git-clone | |
| run: | | |
| git clone https://github.com/tmaklin/alignment-writer | |
| cd alignment-writer | |
| git checkout ${{ github.ref_name }} | |
| - name: Configure source build | |
| id: run-cmake | |
| run: | | |
| source /hbb_exe/activate | |
| export LDFLAGS="-L/lib64 -static-libstdc++" | |
| rm --force /hbb/bin/git | |
| ln -s /usr/bin/git /hbb/bin/git | |
| cd /io/tmp/alignment-writer | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_CXX_FLAGS="-march=x86-64 -mtune=generic -m64" -DCMAKE_C_FLAGS="-march=x86-64 -mtune=generic -m64" -DCMAKE_WITH_FLTO=1 -DCMAKE_WITH_NATIVE_INSTRUCTIONS=OFF .. | |
| - name: Compile Linux x86_64 binary | |
| id: run-make | |
| run: | | |
| cd /io/tmp/alignment-writer/build | |
| source /hbb_exe/activate | |
| export LDFLAGS="-L/lib64 -static-libstdc++" | |
| rm --force /hbb/bin/git | |
| ln -s /usr/bin/git /hbb/bin/git | |
| make VERBOSE=1 -j | |
| - name: Create distributable archive | |
| id: gather-stuff | |
| run: | | |
| cd /io/tmp/alignment-writer/build | |
| target=alignment-writer-${{ github.ref_name }}}-$(gcc -v 2>&1 | grep "^Target" | cut -f2 -d':' | sed 's/[[:space:]]*//g') | |
| path=/io/tmp/$target | |
| mkdir $path | |
| cp ../build/bin/alignment-writer $path/ | |
| cp ../README.md $path/ | |
| cp ../LICENSE $path/ | |
| cd /io/tmp | |
| tar -zcvf $target.tar.gz $target | |
| mv $target.tar.gz /io/ | |
| cd /io/ | |
| rm -rf tmp cache | |
| - name: Upload linux-x86_64 binary | |
| if: success() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: themisto-${{ github.ref_name }}-x86_64-redhat-linux | |
| path: /io/themisto-${{ github.ref_name }}-x86_64-redhat-linux.tar.gz | |
| ## build_macOS-x86_64: | |
| ## runs-on: ubuntu-latest | |
| ## container: ghcr.io/shepherdjerred/macos-cross-compiler:latest | |
| ## steps: | |
| ## - name: Install wget | |
| ## id: install-wget | |
| ## run: apt install -y wget | |
| ## - name: Create io directory | |
| ## id: mkdir-io | |
| ## run: mkdir /io && cd /io | |
| ## - name: Download x86_64 toolchain file | |
| ## id: dl-toolchain-file | |
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/x86-64-toolchain_GNU.cmake && cp x86-64-toolchain_GNU.cmake /io/x86-64-toolchain_GNU.cmake && cp x86-64-toolchain_GNU.cmake /x86-64-toolchain_GNU.cmake | |
| ## - name: Download build script | |
| ## id: dl-build-script | |
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/build.sh | |
| ## - name: Compile binary in macOS Cross Compiler container | |
| ## id: compile-in-container | |
| ## run: chmod +x build.sh && ./build.sh ${{ github.ref_name }} x86-64 | |
| ## - name: Upload macOS-x86_64 binary | |
| ## if: success() | |
| ## uses: actions/upload-artifact@v3 | |
| ## with: | |
| ## name: themisto-${{ github.ref_name }}-x86_64-apple-darwin22 | |
| ## path: /io/themisto-${{ github.ref_name }}-x86_64-apple-darwin22.tar.gz | |
| ## build_macOS-arm64: | |
| ## runs-on: ubuntu-latest | |
| ## container: ghcr.io/shepherdjerred/macos-cross-compiler:latest | |
| ## steps: | |
| ## - name: Install wget | |
| ## id: install-wget | |
| ## run: apt install -y wget | |
| ## - name: Create io directory | |
| ## id: mkdir-io | |
| ## run: mkdir /io && cd /io | |
| ## - name: Download arm64 toolchain file | |
| ## id: dl-toolchain-file | |
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/arm64-toolchain_GNU.cmake && cp arm64-toolchain_GNU.cmake /io/arm64-toolchain_GNU.cmake && cp arm64-toolchain_GNU.cmake /arm64-toolchain_GNU.cmake | |
| ## - name: Download build script | |
| ## id: dl-build-script | |
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/build.sh | |
| ## - name: Compile binary in macOS Cross Compiler container | |
| ## id: compile-in-container | |
| ## run: chmod +x build.sh && ./build.sh ${{ github.ref_name }} arm64 | |
| ## - name: Upload macOS-arm64 binary | |
| ## if: success() | |
| ## uses: actions/upload-artifact@v3 | |
| ## with: | |
| ## name: themisto-${{ github.ref_name }}-aarch64-apple-darwin22 | |
| ## path: /io/themisto-${{ github.ref_name }}-aarch64-apple-darwin22.tar.gz | |
| create-release: | |
| runs-on: ubuntu-latest | |
| needs: [ build_linux-x86_64 ] ##, build_macOS-x86_64, build_macOS-arm64 ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| path: build | |
| - name: Organise files | |
| shell: bash | |
| run: | | |
| ## cp build/themisto-${{ github.ref_name }}-aarch64-apple-darwin22/themisto-${{ github.ref_name }}-aarch64-apple-darwin22.tar.gz . | |
| ## cp build/themisto-${{ github.ref_name }}-x86_64-apple-darwin22/themisto-${{ github.ref_name }}-x86_64-apple-darwin22.tar.gz . | |
| cp build/themisto-${{ github.ref_name }}-x86_64-redhat-linux/themisto-${{ github.ref_name }}-x86_64-redhat-linux.tar.gz . | |
| - name: Create release | |
| id: create_release | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| name: Release ${{ github.ref_name }} | |
| draft: false | |
| prerelease: false | |
| fail_on_unmatched_files: true | |
| generate_release_notes: true | |
| files: | | |
| themisto-*.tar.gz |