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| name: Build binaries | ||
| on: | ||
| push: | ||
| tags: | ||
| - "v*.*.*" | ||
| branches: | ||
| - alignment-writer-release-testing | ||
| jobs: | ||
| build_linux-x86_64: | ||
| runs-on: ubuntu-latest | ||
| container: phusion/holy-build-box-64:3.0.2 | ||
| steps: | ||
| - name: Activate Holy Build Box | ||
| id: activate-hbb | ||
| run: | | ||
| source /hbb_exe/activate | ||
| export LDFLAGS="-L/lib64 -static-libstdc++" | ||
| - name: Install dependencies | ||
| id: install-dependencies | ||
| run: | | ||
| yum install -y git | ||
| rm --force /hbb/bin/git | ||
| ln -s /usr/bin/git /hbb/bin/git | ||
| - name: Create io directories | ||
| id: mkdir-io | ||
| run: | | ||
| mkdir /io | ||
| cd /io | ||
| mkdir tmp | ||
| cd tmp | ||
| - name: Clone source tree | ||
| id: run-git-clone | ||
| run: | | ||
| git clone https://github.com/tmaklin/alignment-writer | ||
| cd alignment-writer | ||
| git checkout ${{ github.ref_name }} | ||
| - name: Configure source build | ||
| id: run-cmake | ||
| run: | | ||
| mkdir build | ||
| cd build | ||
| cmake -DCMAKE_CXX_FLAGS="-march=x86-64 -mtune=generic -m64" -DCMAKE_C_FLAGS="-march=x86-64 -mtune=generic -m64" -DCMAKE_WITH_FLTO=1 -DCMAKE_WITH_NATIVE_INSTRUCTIONS=OFF .. | ||
| - name: Compile Linux x86_64 binary | ||
| id: run-make | ||
| run: make VERBOSE=1 -j | ||
| - name: Create distributable archive | ||
| id: gather-stuff | ||
| run: | | ||
| target=alignment-writer-${{ github.ref_name }}}-$(gcc -v 2>&1 | grep "^Target" | cut -f2 -d':' | sed 's/[[:space:]]*//g') | ||
| path=/io/tmp/$target | ||
| mkdir $path | ||
| cp ../build/bin/alignment-writer $path/ | ||
| cp ../README.md $path/ | ||
| cp ../LICENSE $path/ | ||
| cd /io/tmp | ||
| tar -zcvf $target.tar.gz $target | ||
| mv $target.tar.gz /io/ | ||
| cd /io/ | ||
| rm -rf tmp cache | ||
| - name: Upload linux-x86_64 binary | ||
| if: success() | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: themisto-${{ github.ref_name }}-x86_64-redhat-linux | ||
| path: /io/themisto-${{ github.ref_name }}-x86_64-redhat-linux.tar.gz | ||
| ## build_macOS-x86_64: | ||
| ## runs-on: ubuntu-latest | ||
| ## container: ghcr.io/shepherdjerred/macos-cross-compiler:latest | ||
| ## steps: | ||
| ## - name: Install wget | ||
| ## id: install-wget | ||
| ## run: apt install -y wget | ||
| ## - name: Create io directory | ||
| ## id: mkdir-io | ||
| ## run: mkdir /io && cd /io | ||
| ## - name: Download x86_64 toolchain file | ||
| ## id: dl-toolchain-file | ||
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/x86-64-toolchain_GNU.cmake && cp x86-64-toolchain_GNU.cmake /io/x86-64-toolchain_GNU.cmake && cp x86-64-toolchain_GNU.cmake /x86-64-toolchain_GNU.cmake | ||
| ## - name: Download build script | ||
| ## id: dl-build-script | ||
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/build.sh | ||
| ## - name: Compile binary in macOS Cross Compiler container | ||
| ## id: compile-in-container | ||
| ## run: chmod +x build.sh && ./build.sh ${{ github.ref_name }} x86-64 | ||
| ## - name: Upload macOS-x86_64 binary | ||
| ## if: success() | ||
| ## uses: actions/upload-artifact@v3 | ||
| ## with: | ||
| ## name: themisto-${{ github.ref_name }}-x86_64-apple-darwin22 | ||
| ## path: /io/themisto-${{ github.ref_name }}-x86_64-apple-darwin22.tar.gz | ||
| ## build_macOS-arm64: | ||
| ## runs-on: ubuntu-latest | ||
| ## container: ghcr.io/shepherdjerred/macos-cross-compiler:latest | ||
| ## steps: | ||
| ## - name: Install wget | ||
| ## id: install-wget | ||
| ## run: apt install -y wget | ||
| ## - name: Create io directory | ||
| ## id: mkdir-io | ||
| ## run: mkdir /io && cd /io | ||
| ## - name: Download arm64 toolchain file | ||
| ## id: dl-toolchain-file | ||
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/arm64-toolchain_GNU.cmake && cp arm64-toolchain_GNU.cmake /io/arm64-toolchain_GNU.cmake && cp arm64-toolchain_GNU.cmake /arm64-toolchain_GNU.cmake | ||
| ## - name: Download build script | ||
| ## id: dl-build-script | ||
| ## run: wget https://raw.githubusercontent.com/algbio/themisto/${{ github.ref_name }}/deploy/macOS/build.sh | ||
| ## - name: Compile binary in macOS Cross Compiler container | ||
| ## id: compile-in-container | ||
| ## run: chmod +x build.sh && ./build.sh ${{ github.ref_name }} arm64 | ||
| ## - name: Upload macOS-arm64 binary | ||
| ## if: success() | ||
| ## uses: actions/upload-artifact@v3 | ||
| ## with: | ||
| ## name: themisto-${{ github.ref_name }}-aarch64-apple-darwin22 | ||
| ## path: /io/themisto-${{ github.ref_name }}-aarch64-apple-darwin22.tar.gz | ||
| create-release: | ||
| runs-on: ubuntu-latest | ||
| needs: [ build_linux-x86_64 ] ##, build_macOS-x86_64, build_macOS-arm64 ] | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/download-artifact@v2 | ||
| with: | ||
| path: build | ||
| - name: Organise files | ||
| shell: bash | ||
| run: | | ||
| ## cp build/themisto-${{ github.ref_name }}-aarch64-apple-darwin22/themisto-${{ github.ref_name }}-aarch64-apple-darwin22.tar.gz . | ||
| ## cp build/themisto-${{ github.ref_name }}-x86_64-apple-darwin22/themisto-${{ github.ref_name }}-x86_64-apple-darwin22.tar.gz . | ||
| cp build/themisto-${{ github.ref_name }}-x86_64-redhat-linux/themisto-${{ github.ref_name }}-x86_64-redhat-linux.tar.gz . | ||
| - name: Create release | ||
| id: create_release | ||
| uses: softprops/action-gh-release@v1 | ||
| with: | ||
| name: Release ${{ github.ref_name }} | ||
| draft: false | ||
| prerelease: false | ||
| fail_on_unmatched_files: true | ||
| generate_release_notes: true | ||
| files: | | ||
| themisto-*.tar.gz | ||
