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Fixes from #5
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tkchafin authored Jan 23, 2024
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Expand Up @@ -48,19 +48,6 @@ An input geospatial network (as shapefile, geodatabase, or .gpkg) is first used
Kalinowski ST, MH Meeuwig, SR Narum, ML Taper (2008) Stream trees: a statistical method for mapping genetic differences between populations of freshwater organisms to the sections of streams that connect them. Canadian Journal of Fisheries and Aquatic Sciences (65:2752-2760)
```

### Installation with GitHub

Simple installation of the development version may be done simply as:
```
git clone https://github.com/tkchafin/autostreamtree.git
cd autostreamtree
pip install .
```

The command-line interface is then accesible as `autostreamtree`.

### Installation with conda/mamba

The recommended method of installation is with conda or mamba. First, create \
Expand Down Expand Up @@ -125,13 +112,13 @@ Once this is done, you can create a conda environment:
conda create -n streamtree
conda activate streamtree
conda config --env --set subdir osx-64
conda install python=3.10 mamba
conda install python=3.10
```

Then install `autostreamtree`:

```
mamba install -c ecoevoinfo -c conda-forge -c bioconda autostreamtree
conda install -c ecoevoinfo -c conda-forge -c bioconda autostreamtree
```

## 2. Usage <a name="ast"></a>
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