Harmonize

.github/workflows/R-CMD-check-dev.yaml

@@ -277,6 +277,7 @@ jobs:
           _R_CHECK_SYSTEM_CLOCK_: false
           _R_CHECK_FUTURE_FILE_TIMESTAMPS_: false
         run: |
+          options(crayon.enabled = TRUE)
           error_on <- "note"
           # Begin custom: rcmdcheck error_on
           # End custom: rcmdcheck error_on
@@ -285,7 +286,8 @@ jobs:
 
       - name: Show test output
         if: always()
-        run: find check -name '*.Rout*' -exec head -n 1000000 '{}' \; || true
+        run: |
+          find check -name '*.Rout*' -exec head -n 1000000 '{}' \; || true
         shell: bash
 
       - name: Upload check results

.github/workflows/R-CMD-check.yaml

@@ -114,6 +114,12 @@ jobs:
             eval sudo $cmd
           done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "${{matrix.config.os-version}}"))')
 
+      - name: Add fake qpdf and checkbashisms
+        if: runner.os == 'Linux'
+        run: |
+          sudo ln -s $(which true) /usr/local/bin/qpdf
+          sudo ln -s $(which true) /usr/local/bin/checkbashisms
+
       - name: Install dependencies
         run: |
           remotes::install_deps(dependencies = TRUE, type = .Platform$pkgType)

.github/workflows/pkgdown.yaml

@@ -25,6 +25,7 @@ jobs:
     # Begin custom: services
     # End custom: services
     env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       RSPM: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       # prevent rgl issues because no X11 display is available
@@ -40,6 +41,24 @@ jobs:
 
       - uses: actions/checkout@v2
 
+      - name: Install pkgdown sysdeps
+        if: runner.os == 'Linux'
+        env:
+          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
+        run: |
+          # Needed because of install-r: false
+          sudo apt-get update
+          # For some reason harfbuzz and gert are installed from source and needs this
+          sudo apt-get install -y libharfbuzz-dev libfribidi-dev libgit2-dev
+
+      - name: Configure Git identity
+        if: github.event_name == 'push'
+        run: |
+          env | sort
+          git config --local user.name "$GITHUB_ACTOR"
+          git config --local user.email "[email protected]"
+        shell: bash
+
       # Begin custom: before install
       # End custom: before install
 
@@ -56,42 +75,33 @@ jobs:
         shell: Rscript {0}
 
       - name: Query dependencies
+        if: runner.os != 'Windows'
         run: |
           saveRDS(remotes::dev_package_deps(dependencies = TRUE, type = .Platform$pkgType), ".github/depends.Rds", version = 2)
           writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
         shell: Rscript {0}
 
       - name: Restore R package cache
+        if: runner.os != 'Windows'
         uses: actions/cache@v2
         with:
           path: ${{ env.R_LIBS_USER }}
           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
           restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Configure Git identity
-        if: github.event_name == 'push'
-        run: |
-          env | sort
-          git config --local user.name "$GITHUB_ACTOR"
-          git config --local user.email "[email protected]"
-        shell: bash
-
       - name: Install system dependencies
         if: runner.os == 'Linux'
         run: |
-          sudo apt-get update
           while read -r cmd
           do
             eval sudo $cmd
           done < <(Rscript -e 'req <- remotes::system_requirements("ubuntu", "18.04"); if (length(req) > 0) cat(req, sep = "\n")')
 
-      - name: Install pkgdown sysdeps
+      - name: Add fake qpdf and checkbashisms
         if: runner.os == 'Linux'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
         run: |
-          # For some reason harfbuzz and gert are installed from source and needs this
-          sudo apt-get install -y libharfbuzz-dev libfribidi-dev libgit2-dev
+          sudo ln -s $(which true) /usr/local/bin/qpdf
+          sudo ln -s $(which true) /usr/local/bin/checkbashisms
 
       - name: Install dependencies
         run: |
@@ -105,9 +115,6 @@ jobs:
       # Begin custom: install
       # End custom: install
 
-      - name: Install package
-        run: R CMD INSTALL . --with-keep.source --with-keep.parse.data
-
       - name: Session info
         run: |
           options(width = 100)
@@ -119,6 +126,9 @@ jobs:
       # Begin custom: after install
       # End custom: after install
 
+      - name: Install package
+        run: R CMD INSTALL . --with-keep.source --with-keep.parse.data
+
       - name: Deploy package
         if: github.event_name == 'push'
         run: |

.github/workflows/test-coverage.yaml

@@ -17,6 +17,7 @@ jobs:
     # Begin custom: services
     # End custom: services
     env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       RSPM: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       # prevent rgl issues because no X11 display is available
@@ -47,13 +48,15 @@ jobs:
           if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
         shell: Rscript {0}
 
-      - name: Prepare cache keys
+      - name: Query dependencies
+        if: runner.os != 'Windows'
         run: |
           saveRDS(remotes::dev_package_deps(dependencies = TRUE, type = .Platform$pkgType), ".github/depends.Rds", version = 2)
           writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
         shell: Rscript {0}
 
       - name: Restore R package cache
+        if: runner.os != 'Windows'
         uses: actions/cache@v2
         with:
           path: ${{ env.R_LIBS_USER }}
@@ -68,6 +71,12 @@ jobs:
             eval sudo $cmd
           done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "18.04"))')
 
+      - name: Add fake qpdf and checkbashisms
+        if: runner.os == 'Linux'
+        run: |
+          sudo ln -s $(which true) /usr/local/bin/qpdf
+          sudo ln -s $(which true) /usr/local/bin/checkbashisms
+
       - name: Install dependencies
         run: |
           remotes::install_deps(dependencies = TRUE, type = .Platform$pkgType)