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Will aggregate_cells live in one of the tidy transcriptomics Bioc packages? #2

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mikelove opened this issue Jan 31, 2023 · 7 comments
Open

Will aggregate_cells live in one of the tidy transcriptomics Bioc packages? #2

mikelove opened this issue Jan 31, 2023 · 7 comments

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@mikelove
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Saw this from Constantin @const-ae

https://twitter.com/const_ae/status/1620368045846970370
@stemangiola
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Nice.

I don't know where to put it honestly. It is part of an internal tidysinglecell package, but that won't be public.

if you find a package suitable for it let me know, I would be happy to donate it :)

@mikelove
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Why not tidySingleCellExperiment?

@stemangiola
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Strictly speaking, tidySCE is an adaptor for tidyverse

@mikelove
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Maybe adding some simple code on how to pseudobulk to the landing page of tidySCE? It seems to be a common use case

@stemangiola
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Cool. I will ponder to add it to tidySCE and tidyseurat. Especially if it's needed.

@stemangiola stemangiola mentioned this issue Feb 2, 2023
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@stemangiola
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Referenced here

stemangiola/tidySingleCellExperiment#54

@stemangiola
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Here the pull request

stemangiola/tidySingleCellExperiment#57

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@mikelove @stemangiola