adapter tutorials to new framework

[lisa-sousa]

PR Checklist

• Documentation in docs is updated

Description of changes

Changed and adapted the end to end selection tutorials to the oligo designer tool suite API. Updated dependency description and added examples for config files.

Technical details

New API is significantly faster and requires significantly less memory. The memory consumption is now limited by a maximum number of entries that is loaded into ram. The db_max_memory defines how many entries are loaded and has to be at least 2*n_job+1 to run without errors. db_max_memory is set internally in the pipeline to the value describes above. If the memory consumption is too high because too many entries are loaded into ram the performance of the program will be significantly decreased and hence its adviced to decrease the number of jobs n_jobs. For a laptop with 8cores and 16GB RAM and values of n_jobs=4 is a good value.

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Hi @lisa-sousa,

It looks like this pull-request is has been made against the theislab/spapros master or main branch.
The master/main branch should always contain code from the latest release.
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Thanks again for your contribution!