Code to reproduce results from the CellRank preprint - if you're looking for the reproducibility repository for the final Nature Methods paper, that is here. Please find the main CellRank website at cellrank.org and the preprint at bioRxiv.
Raw published data for the pancreas, lung and reprogramming examples is available from the Gene Expression Omnibus (GEO) under accession codes GSE132188, GSE141259 and GSE99915, respectively. Processed data, including spliced and unspliced count abundances, is available from figshare. For convenience, the pancreas and lung examples
are also available through cellrank.datasets
.
You can click the link under figure
to open the notebooks in the browser using nbviewer.