sleap keypoints and metadata to .csv or .yaml DLC format

[r-shruthi11]

Hey y'all,

I'm wondering if you have any utils to go from tracked + proofread .slp files to DLC-type .csv or .yaml formatted files? I see you have this to go from DLC to sleap but anything for the reverse?

Cheers,
Shruthi

[roomrys]

Hi @r-shruthi11,

Unfortunately, we do not currently have an adaptor to go SLEAP to DLC. The only format (other than SLEAP specific formats - .pkg.slp,
.analysis.h5) that SLEAP currently exports to is NWB (with an open PR for exporting to Nix).

Thanks,
Liezl

[sronilsson]

@r-shruthi11 there is a nb here by @Toshea111 to get it into slp h5 into CSV. https://colab.research.google.com/drive/1EpyTKFHVMCqcb9Lj9vjMrriyaG9SvrPO?usp=sharing

[r-shruthi11]

this looks great - thanks!

[Toshea111]

Dear r-shruthi11,

I have provided an updated version of the notebook here:

https://github.com/Toshea111/sleap/blob/develop/docs/notebooks/Convert_HDF5_to_CSV_updated.ipynb

It fixes some issues with compatibility and illegal slicing arguments in the original version.

Best wishes,

Thomas