Initial release for https://doi.org/10.1371/journal.pcbi.1005704

Host population structure impedes reversion to drug sensitivity after discontinuation of treatment .

This is a merge of the 'reversion' branch used in the project mentioned above with the master branch at stage v0.1.0.
Merge conflicts have been resolved in favor of the 'reversion' branch. It is not excluded that some changed introduced from v0.1.0 might interfere with the correct functioning of the 'reversion' branch. If you encounter any issues using this version please report this by opening a new issue.

If you are using this particular version of EndemicPy for your own work, please make sure to correctly refer to the software package and to our study Host population structure impedes reversion to drug sensitivity after discontinuation of treatment for which this version has been adapted to.

Initial release for https://doi.org/10.1371/journal.pcbi.1005527

Short-term activity cycles impede information transmission in ant colonies .

A working example illustrating how UIU-propagation can be simulated on raw contact data can be found under examples/ant_colony/.

If you are using this particular version of EndemicPy for your own work, please make sure to correctly refer to the software package and to our study Short-term activity cycles impede information transmission in ant colonies for which this version has been adapted to.