Skip to content

Issues: swolock/scrublet

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

46 Open 13 Closed
46 Open 13 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Does scrublet change the barcode names?
#62 opened Nov 21, 2024 by st4302
scrub.scrub_doublets() hangs
#61 opened Jun 14, 2024 by obrien-james
1
does scrublet work with 10X fixed rna profiling?
#60 opened May 2, 2024 by tea-egg-sheldon
Doubets do not occupy distinct states
#59 opened Jan 23, 2024 by AAA-3
Question normalize_variance
#58 opened Nov 15, 2023 by JuliaChristiaanse
Scrublet runs into an endless loop
#56 opened Oct 17, 2023 by aditinarsale
Export scrublet plots to .png or .pdf files
#55 opened Jul 13, 2023 by DieTANG
2
Multiplets after scrublet?
#54 opened Jun 22, 2023 by rhlgyb
Doublet for mixed species
#53 opened May 29, 2023 by rjg2186
pip install error in windows anaconda prompt
#52 opened May 17, 2023 by archana433
2
Will there be a version compatible with python 3.9?
#51 opened Apr 28, 2023 by havu73
Illegal instruction core dumped error
#50 opened Feb 24, 2023 by PDhingra2016
2
input data with pearson residuals workflow
#49 opened Sep 23, 2022 by brainfo
2
output file with cell barcodes?
#48 opened Sep 19, 2022 by azwainCC
Number genes value is different
#47 opened Sep 14, 2022 by IlianCx
Potential mistake: percentile vs quantile
#45 opened Aug 11, 2022 by iaaka
The result shows that there is only one double cell, but there are many on umap
#44 opened Jul 17, 2022 by ouyangcuihuaa
pip install error
#43 opened May 2, 2022 by ulloaa
2
How to delete doublets from Seurat object
#42 opened Apr 24, 2022 by GreyRockIQ
1
Do I use scrublet after doing the standard preprocessing from Seurat?
#41 opened Apr 13, 2022 by st4302
1
Error: ValueError: Expected 1D or 2D array, got 0D array instead
#40 opened Mar 30, 2022 by TingtingSsl2
1
Threshold setting on non bimodal simulated doublet score distribution
#39 opened Mar 30, 2022 by liliay
Rolling back uninstall of llvmlite
#38 opened Feb 27, 2022 by brianpenghe
2
Scrublet in development atlas
#35 opened Dec 7, 2021 by DiracZhu1998
scrub_doublets still completes without annoy, nearest neighbor search
#34 opened Nov 12, 2021 by RoganGrant
2
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.