swc-releases

Container for Software Carpentry lesson releases

• http://swcarpentry.github.io/swc-releases/2017.08/
• http://swcarpentry.github.io/swc-releases/2017.02/
• http://swcarpentry.github.io/swc-releases/2016.06/
• http://swcarpentry.github.io/swc-releases/2015.08/ (5.3)

Release Model: as of 2017.02/08

Pre task: ensure AUTHORS are ok in all repositories

Pre setup:

• cp private.template.ini private.ini
• edit private.ini and set your access keys in it
• install/update some R packages (see below for now)
• use python3 rel.py 1 --version 2017.02 to generate a template ini file from the latest version
• cp auto.ini 2017.02.ini (you might edit this file or the generator code if you need fine tuning)

Fully semi-automated with the following steps (create the branches, build and zenodo):

• use python3 rel.py A B ..., where B is your .ini file, and A will take the values
  • 2 will clone the repositories, you can pass a git depth with --depth to make the clone faster/smaller (NB: don't limit depth if you intend to use the repository to create the AUTHORS etc)
  • 3 will get the sha1 corresponding to the tip of gh-pages, you can then edit the .ini file if you want to release older versions for certain repositories
  • 4 will create the (empty) Zenodo submissions, adding some identifiers in the .ini file
  • 5 will create the branches, build the lessons, and push
  • 6 will gather info from the repositories, filling the the .ini with it
  • 7 will fill-in or update the Zenodo submissions
  • 8 will zip the lessons into the zips/ folder (by default)
  • 9 will upload the zips to Zenodo, you can later re-upload by removing the zenodo_file in the ini file, and pass --force-replace
  • final-publish-zenodo to publish Zenodo submissions, meaning they won't be deletable afterwards it is recommended to do it manually on the Zenodo website, to be sure there are no mistakes before publishing

Then, we need to setup the actual hosting on http://swcarpentry.github.io/swc-releases/20??.??/. For now, it uses the old tool:

• one need to update the Makefile and run it

NB: compared to before

• we are acting the fact that the complete process is done by the releaser (no distinction between the role of lesson maintainers and release creator)
• we use a descriptor file (that also get enriched), from which we generate the everything (Zenodo, branches, ...)
• rewrote and wrote a big part of the process in python (branches, zenodo, etc)

RANDOM NOTES 2017-08-03 (while updating and releasing)

Preparing and getting latest versions (anyway there will be some implementation work, this time, to get the author list up to date (with opt-out))

alias A='./authors.sh 2017.08.ini'
function B() { local p1="$1" ; shift ; python3 rel.py "$p1" 2017.08.ini "$@" ; }

python3 rel.py 1 --version 2017.08
mv auto.ini 2017.08.ini
##DO: manually remove instructor training as we are not releasing it
B git-for-all branch
B git-for-all checkout gh-pages
B git-for-all branch
B git-for-all pull

Now, let's tune the authors (this time, it involves some implementation, so it will probably change for the next release)

./authors.sh --help

A check-pull-requests
#^ not so clean, too many to actually check now

A check-all-mailmap
##DO: manually removed one duplicate
##DO: manually created and fixed all-moreinfo

A process-repo
emacs ,,.todo-mailmapclean all-mailmap
##DO: add manually, sort-lines, and look for proper names for each TODO, ... very tedious
##^ use 'zz-...' when not really found
A check-all-mailmap
##DO: continue fixing, checking also all "Missing" to find typos (but many have actually not commited anything or on instructor-training which is not in this release?)
A obfuscate
##DO: do commit new authors

Now that we have a decent global mailmap, let's patch all repositories (with their own .mailmap and AUTHORS). This is the occasion to list as AUTHORS only the ones that: contributed (outside style and did not opt out for these commits, this is automated).

B git-for-all checkout -- .mailmap AUTHORS
A process-repo
B sort-authors
B git-for-all diff

Now we will really push the author changes, be sure of what we have...

B git-for-all diff
B git-for-all add .mailmap AUTHORS
B git-for-all commit -m 'Updating mailmap and AUTHORS before release'
B git-for-all push

NOW, let's go for the release, we already have the ini file (we'll add it to have temporary backups and diffs). NB: need to (re)do the R installation (see section below).

alias C='git diff 2017.08.ini ; git add 2017.08.ini'
C
B
B 3
C
# for the next step, one need a/the zenodo token
B 4
C
B 5
#^ R failed (forgot to install stuff), so we need to redo (this skips already pushed ones so it is ok)
B 5
#^ the new TAG feature failed so we fix and rerun
B 5
B git-for-all log --oneline -n 2
#^ to be sure of wether some did not work (temporary add force_branch=1 in the ini for repo to redo)
A
#^ to be sure to unobfuscate
B 6
#^ needed a few run as I was making the orcid handling at the same time (need to remove the lines in the .ini so they get rebuilt)
##DO: for the templates, manually set maintainers to "Silva, Raniere;Emonet, Rémi@0000-0002-1870-1329"
C
B 7
B 8
B 9
A obfuscate
C

Now, we need to check on zenodo, but we can still also host the release (it is a good preview at worse).

##DO: modify the makefile, taking inspiration from   git  log -p 775456~..775456 -- Makefile
#^ this time, a new lesson set had to be created (as we don't release the instructor-training)
git add Makefile
make 2017.08
#^ got a failure du to wrong handling of tags (fixed), but need to redo
rm -rf 2017.08/
make clean-failure
make 2017.08

git commit -m 'Release 2017.08'

And we can make some bibtex and html:

B print-publication-record -o bib-html.html
B print-bibtex -t book     -o bib-book.bib
B print-bibtex             -o bib-misc.bib

RANDOM NOTES 2017-06-03 (somewhat jibberish)

python3 rel.py 1 --version 9999-none
python3 rel.py git-for-all auto.ini branch
python3 rel.py git-for-all auto.ini checkout gh-pages
python3 rel.py git-for-all auto.ini branch
python3 rel.py git-for-all auto.ini pull

head -6 auto.ini > tmp.ini    

./authors.sh tmp.ini check-author-diff-summary

tail -13 auto.ini |head -7 > tmp.ini
# or a pair of lesson or anything, or start from some reduced 2017.02

python3 rel.py git-for-all tmp.ini stash
python3 rel.py git-for-all tmp.ini checkout 2017.02~~
RE=YES ./authors.sh tmp.ini process-repo
python3 rel.py 3 tmp.ini
python3 rel.py 6 tmp.ini
python3 rel.py print-bibtex tmp.ini

Release Model: how the 2016.06 release was done

Generally, the complete release is a two step process:

• branch and build on each lesson, pushing the changes
• create a folder and submodules, on the swc-releases

Both steps are currently semi-automated. Some more details on these two steps are given here.

Preparing all lessons for the release

This step has been automated by a bash function defined in tools-for-lesson-maintainers.sh (swc-releases repository) and that has been run with:

. tools-for-lesson-maintainers.sh
do-2016-06-from-gvwilson-list

This function will do the following for each lesson, e.g., for git-novice with version 2016.06:

• clone the repository as ,,git-novice if not already present (warning: one might need to remove the folder if changes have been push to github since the checkout)
• create a new branch 2016.06 from the latest gh-pages version (see NB)
• build the lesson, setting the Jekyll path to work on the swc-releases site
• copy the files that were just built and commit them
• patch the css to show the version number and commit it
• push the new branch

NB: WARNING: 2016.06: the workshop-template and lesson-example should use tags (the script does use branches as of 2016.06) as import.github.com does not play well enough with multiple branches. (this warning can be remove if the script is modified to handle this special cases).

NB: the two commits are prefixed with the DOI of the lesson.

NB: one need push access rights to all repositories to do that. The alternative is to have individual lesson maintainers do these steps.

The function can be copied and adapted for another new release.

Populating the swc-releases repository

This step has been automated and live in this repository, where the main entry point is the Makefile. To make the release, the following commands has been run:

make 2016.06
git commit -m 'Release 2016.06'
git push

To be able to run this, the following preparation has been necessary:

• modify the Makefile to add the 2016.06 entry, and creating CORE_LESSONS_B (necessary only when the list of lessons changed)

When run, make 2016.06 will run make-or-update-release.sh that will do the following:

• create a 2016.06 folder
• adding in this folder, one submodule per lesson (that tracks the 2016.06 branch of the lesson repository)
• generating an (ugly) HTML page 2016.06/index.html
• adding everything so it is ready to commit
• encouraging the user to git commit and push

About lessons using R (and RMarkdown in .rmd files)

One need to install R and some packages to build the lessons.

Installing R is platform dependent, e.g., under some linux distributions you can use apt-get install r-base.

One can then install the necessary packages by starting R and running:

install.packages("knitr")
install.packages("tidyr")
install.packages("dplyr")
install.packages("plyr")
install.packages("DiagrammeR")
install.packages("ggplot2")
install.packages("devtools")
install.packages("roxygen2")
install.packages("checkpoint")

Troubleshooting and help when having to do a release multiple times

help with preparing lessons

In case the preparation process needs to be re-run, for instance because the build process need to be tuned, one may use the following tools (some functions are defined in tools-for-lesson-maintainers.sh).

• rm -rf ,,* to remove all checked out lessons: this can be useful if some changes, that needs to be integrated has been pushed on github since the clone
• do-reset-,,-to-ghpages to switch all checked out lesson repositories to the gh-pages branch (in case we want to rerun the script and that the script checks the current state of the repo, as done by the commented-out do-check-justmerged in do-2016-06-from-gvwilson-list)

help with populating swc-releases

• make check-submodules to check that the revisions that submodules reference still exist on github (an absence causes Jekyll build issues)
• rm -rf 2016.06 and make clean-failure to remove the generated folder and submodules
• IMPORTANT: also rm -rf .git/modules/2016.06 to remove the submodule cache, in case some content has been force pushed to the lessons
• git rebase -i HEAD^^ and later git push --force to rewrite history with a new version
• make update-submodules after uncommenting the necessary line in the Makefile: to update the submodules if new commits have been added to the 2016.06 branches in any lesson repository (need to then add/commit/push)

(old, still somewhat meaningful) Tentative Instructions for post bbq release

These instructions should help doing the release. An informed release maintainer can also look at tools-for-lesson-maintainers.sh that contains script snippets that aim at automating the process.

Step 1: Lesson Maintainers

NB: the HTML pages can be built before (on the gh-pages branch) or after (only in the release branch).

IMPORTANT: your pandoc version may matter for building the pages, see this thread http://lists.software-carpentry.org/pipermail/discuss/2016-June/004553.html (1.12 seems to not be fine with some source files, even if you don't see any errors when building) (some code blocks don't have newlines, classes are missing, etc)

You should already be on the gh-pages branch, but, if not, switch to it:

git checkout gh-pages

Once the lesson (it's main gh-pages branch) is in a state to be release, the first step is to create a new branch that will be named 2016.06-beta.

git checkout -b 2016.06-beta
# (use -B if you need to start over and force the re-creation of the branch)

If the HTML pages were not built yet, do it now and commit with a relevant message, the commands might look like this:

# example to build the HTML pages and commit
make clean preview
git add *.html
git status
git commit -m "Rebuilt HTML files for release 2016.06-beta"

Then we will patch the css, so that the version is displayed on all pages. Open the css/swc.css file and add, at the end, the following block (including the comments):

/* version added automatically */
div.banner::before {
    content: "Version 2016.06-beta";
    font-size: 10px;
    font-family: monospace;
    font-weight: bold;
    line-height: 1;
    /* */
    position: fixed;
    right: 0;
    top: 0;
    z-index: 10;
    /* */
    color: white;
    background: rgb(43, 57, 144);
    padding: 3px;
    border: 1px solid white;
}

Then commit this change with:

git add css/swc.css
git commit -m "Added version (2016.06-beta) to all pages via CSS"

Then push the branch:

git push --set-upstream origin 2016.06-beta
# use --force if you had already pushed the branch and started over

And you can switch back to the main branch:

git checkout gh-pages

Step 2: Release Maintainer

Once all maintainers have created their branches, the release can be initiated.

The Makefile has already been prepared (if curious, look for 2016.06-beta inside), so you need to run:

make 2016.06-beta
# (and wait some time for the submodules to be added)

Then you can briefly review and commit:

git status
git commit -m "Release 2016.06-beta (after Bug BBQ)"

And finally push:

git push

After letting some time to github to rebuild the site, you should see the release at http://swcarpentry.github.io/swc-releases/2016.06-beta/ and each lessons should "work" and have a small banner with the version.